Malus sylvestris (European crab apple): 126623951
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Entry
126623951 CDS
T09027
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
126623951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126623951
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
126623951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
ZnF_RZ-type
Zn_Ribbon_1
DUF1258
C1_1
Motif
Other DBs
NCBI-GeneID:
126623951
NCBI-ProteinID:
XP_050148885
LinkDB
All DBs
Position
5:complement(46401637..46406173)
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AA seq
546 aa
AA seq
DB search
MSTADLILRPECGGCKTTKDLYGSNCKHLTLCDDCGKQMALNRAKCNECGAVVTRLIREY
NVRASTVNDKNYFIGRFVTGLPSFSKTKNSENKWSLHKDGLQGRQLSDAMREKYKNKPWV
LEDESGRSQYQGHLEGAQTATYYLLIKHPSGKEFSAIPAGSWFNFNKVAQYKQLTLEEAE
EKISNRKKTADGYERWMMKAANNGAALFGEVERFDNDNGVAGGKGRKKTAGGGDDEEGNG
SDRGDEDDEEELERKKRLNKRGGDGDGDDDDEGARGGDADMDDDDIEKGDDWEHEEIFTD
DDEAVGNNPEEREDLEPEIPAPPEIKQDDEDEDEDDKEGGLSKSGKELKKLLGRSGGLND
SDVEDDDDDDDDMDDDIGLPSELAPKQKDAPKEEPSDNSPSKPTPSASSRGTTSTSKSSK
GKRKSSGDDAKASNSAPSKKVKTENEQKSIKEEPVSVPASKSSAPPKGTPPVKTEPSSSG
GRVTEEEIRAVLMQRTPLTTNDLVSKFKGRLKSSEEKAAFSSILRRISKIKKGNNGTSSF
IVLKER
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggccgatttgatactgagacctgagtgtggtggatgtaaaacgaccaaggat
ttatacggaagcaattgcaagcacttgactctgtgcgacgactgtggcaaacaaatggct
ctcaaccgcgccaagtgcaacgagtgcggcgccgtcgtcactcgcttaattcgagaatat
aatgttcgagcgagtactgtcaatgacaagaattacttcattgggagatttgtgacgggg
ttgccgagtttttcgaagacgaagaattctgaaaataaatggtctctccacaaggatgga
ctacaaggacgccaacttagtgatgccatgcgggagaagtacaagaataaaccctgggtt
ttggaggacgaaagtggccggtctcagtaccagggtcatcttgaaggtgcacagactgca
acctactacttgctaataaagcatccctctggaaaggagttttctgctattcctgctggt
tcttggttcaatttcaacaaggttgcacagtacaaacaacttacattggaggaagccgaa
gagaagattagtaataggaaaaagactgcagatggatatgaaagatggatgatgaaagct
gcaaataatggagctgctttatttggtgaagtggagaggtttgacaacgataatggtgtg
gctggtgggaagggacgaaaaaagacagctggtggtggtgatgatgaagaaggaaatggt
tccgatagaggagatgaggatgatgaagaagagttggaaaggaagaaaagattgaacaaa
agaggtggtgatggtgatggtgatgatgatgatgaaggcgcaaggggaggtgatgcagac
atggatgacgatgatatcgagaagggtgatgactgggagcacgaagaaattttcactgat
gatgatgaagctgttggcaacaatcctgaggaaagggaagatttggaaccagagattcca
gctcctccagaaattaagcaggatgatgaggacgaggatgaagatgacaaagagggtgga
ctaagcaaatcaggaaaagagttgaagaagctacttgggcgcagtggtgggctgaatgat
tcagatgtggaggatgacgacgatgacgatgatgatatggatgatgatattggcttacct
tcagagctggctccaaagcagaaggatgcacccaaagaggaaccatctgacaacagcccc
tcaaaaccaacaccttctgcgtccagtcgaggaactacatcaacctccaagtcctcaaag
ggaaagagaaaatcaagtggcgatgatgctaaggcatctaacagtgcaccttccaagaag
gtcaagactgaaaatgaacaaaaatccatcaaagaggagcctgtgtctgtacctgcttct
aaaagtagtgcgcctccaaaaggtactccaccggtgaaaacggagccatcatcatctggt
ggacgcgtcaccgaggaagaaatcagggccgtgttgatgcagagaacaccactcaccacg
aatgatcttgtttctaaatttaagggaagactcaaatcgtctgaggaaaaggctgctttt
tcgagtattctaaggagaatctctaagataaagaagggcaacaacggaaccagcagcttt
atagtactgaaagaacgatga
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