KEGG   Malus sylvestris (European crab apple): 126624087
Entry
126624087         CDS       T09027                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03018  RNA degradation
msyl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    126624087
  09123 Folding, sorting and degradation
   03018 RNA degradation
    126624087
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msyl03019]
    126624087
   03041 Spliceosome [BR:msyl03041]
    126624087
Messenger RNA biogenesis [BR:msyl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     126624087
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     126624087
Spliceosome [BR:msyl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    126624087
SSDB
Motif
Pfam: LSM DUF7452
Other DBs
NCBI-GeneID: 126624087
NCBI-ProteinID: XP_050149060
LinkDB
Position
5:30199082..30202030
AA seq 88 aa
MAANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITPEG
RRITKLDQILLNGNNIAILVPGGSPEAE
NT seq 267 nt   +upstreamnt  +downstreamnt
atggccgccaacaatccttcgcagctactcccatcagagttgatcgaccggtgcataggc
tcgaagatatgggtgataatgaagggtgacaaggagctcgtagggactctgaggggtttc
gatgtctacgtcaacatggtactcgaagacgtcaccgaatatgagattactcctgaagga
agacgtataaccaagcttgatcagattttactcaatggaaacaatattgccattctggtc
cctggcggctcacctgaagcggaatga

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