Malus sylvestris (European crab apple): 126624441
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Entry
126624441 CDS
T09027
Name
(RefSeq) BRCA1-associated RING domain protein 1-like
KO
K10683
BRCA1-associated RING domain protein 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
126624441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126624441
04121 Ubiquitin system [BR:
msyl04121
]
126624441
03036 Chromosome and associated proteins [BR:
msyl03036
]
126624441
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126624441
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
126624441
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
126624441
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
126624441
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
126624441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-HC5HC2H_2
PTCB-BRCT
PHD_NSD
zf-C3HC4_4
zf-C3HC4_2
zf-RING_6
zf-C3HC4_3
zf-C3HC4
zf-RING_UBOX
Prok-RING_4
RTT107_BRCT_5
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
126624441
NCBI-ProteinID:
XP_050149461
LinkDB
All DBs
Position
5:complement(31688350..31693494)
Genome browser
AA seq
694 aa
AA seq
DB search
MVDANPNRKCSDSGNTRSMMNPWVLHFQKLGLELKCPLCLNLLNRPTLLPCDHIFCNCCI
PSSSCPVCKAQVADRDLRPVPFMENIVAIYKSLDASFCANLFQPVSSDVRTILEQNPVLP
NISFAGKMTKEPFDNDQGGNSNSGQSIYSSSAHERVWAPCSLNRSVADGVGNNDNVDKCS
MPIDADGKVLDFARSGVGNPNSQPTSSQIRAGGLDECMTVVGDMNHAAQSLPNSPPSFGD
AKCSDNDSCGRRCEQISENSLVRRSISKIDDGRAGQKRHDSCATEIDGHLRKKIKYEPVL
ETYSELEHKFSTPPNESFTKRTICVFCQSSMISEVTGPMLHYSKERLVEGDEANASNVIH
VHRICIDWAPQVYFEGENVKGLKAEVSRGAKLKCTKCGLKGAALGCFVKSCRRSYHVTCA
TEISKCRWDKENFLLLCPAHRSTKFPGEKSNYGKPKICPQSNSLEAANEMNQWIICPSGL
SSEEKLLLVKFAKKTGATVSKTWRPNVTHLIAALDGDGAYVRTFKTCMAILAGRWILKID
WVKACMEATDHVNEEPYEVSLDNYGCCDGPKTGRLRATNNDPKLFNGLSFYFAGDFLLDR
KEDLQDLIIVAGGTVFNSSEEVMERSCLEHTASRTLVVYNLDPPEGCKLGEEVSILWKRS
NEAQDIAAKIGSQIIGHTWLLESIARCELQPFVC
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggtggacgcaaaccctaaccgtaaatgcagcgacagtggcaataccaggtcgatgatg
aacccgtgggttctccatttccagaaactgggtctcgagctcaagtgccccctctgcttg
aatttgcttaatcgaccgacgttgcttccatgcgatcacattttctgcaattgctgcata
cccagttcgagttgcccggtttgtaaagctcaggttgcggaccgagatctcaggcctgtg
ccgttcatggaaaacatagtagcgatctacaaaagcttggatgcgtctttctgtgccaat
ttgttccagcctgtttcttccgatgttagaaccattctggagcaaaaccctgttttgcct
aatatcagttttgctgggaaaatgactaaagaaccatttgacaatgaccaaggaggtaat
tcaaacagtgggcaatccatctattcatcgagtgctcatgaacgagtttgggctccttgt
agtctgaatcgttctgtagctgatggagttggcaacaatgacaatgtagataagtgtagc
atgccaatagatgctgatggcaaggtattagattttgctagaagcggagtgggaaatccc
aattcacaaccaacaagttctcaaataagagctggtggactcgacgagtgcatgactgta
gtaggagacatgaatcatgcagcacagtcattgcccaacagtcctccttcatttggtgat
gccaaatgttcagataatgatagctgtggtcggcgctgtgagcaaatttcagaaaattct
ttggtcaggagatcgatcagcaaaattgatgatggtagagcagggcagaaaagacatgat
agttgtgcaactgaaattgatggtcatttaagaaagaaaataaagtatgagccagtttta
gagacttattctgagcttgaacataagttcagtacaccacctaatgaatcattcacaaag
agaacaatttgtgtattttgccagtcttctatgatctcggaggttacagggccaatgttg
cattattctaaagagagactggtagagggagatgaggcaaatgcttcaaatgtcatacat
gttcacagaatatgcattgattgggcaccacaagtgtatttcgaaggtgaaaatgttaag
ggattgaaggcagaagtctcaaggggtgcaaagctaaaatgcaccaaatgtgggctaaag
ggagcagctttgggatgctttgtaaagtcctgccggagaagctatcatgttacctgtgca
actgaaatttctaaatgtcgctgggacaaggaaaactttctgctgctatgtccagctcat
cgttcaactaaatttcccggtgagaagtcaaattatgggaagcccaaaatctgtccccag
tccaacagtttggaagctgcaaatgaaatgaatcaatggattatatgcccatccggtttg
tcttctgaagaaaagcttcttttagtcaagtttgccaagaagactggtgcaactgtgtcc
aagacctggagaccaaatgttacacatttgattgcagccctggatggggacggtgcatat
gtcaggacattcaaaacttgcatggccattttggctggaagatggattctgaaaattgac
tgggtaaaagcatgcatggaagccacagatcatgtgaatgaagaaccatatgaagttagt
cttgataactatggatgctgtgatggcccaaaaactggcaggcttcgggcaacaaacaat
gatccgaaactctttaatggtttgagtttctattttgctggtgattttttactggataga
aaggaagatcttcaagatttgatcattgtagcaggaggcactgttttcaacagctcagaa
gaagtgatggaacgaagttgtcttgaacatacagcttcaaggacgctagttgtatacaac
ctcgacccaccagaaggttgcaagttgggggaagaagtttcaatcctttggaaacggtca
aatgaggcccaggatatagctgcgaaaattggatcacaaatcatcggtcacacatggctc
ttggaatcaattgcaagatgcgagttacagccttttgtctgttga
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