Malus sylvestris (European crab apple): 126624716
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Entry
126624716 CDS
T09027
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
msyl04131
]
126624716
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msyl04147
]
126624716
Membrane trafficking [BR:
msyl04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
126624716
Exosome [BR:
msyl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
126624716
Exosomal proteins of bladder cancer cells
126624716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
TPR_COPA_B
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_SPT8
NBCH_WD40
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_At4g14310
Zn_ribbon_19
Motif
Other DBs
NCBI-GeneID:
126624716
NCBI-ProteinID:
XP_050149773
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All DBs
Position
5:complement(39702282..39708303)
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AA seq
1217 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
SSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCALFHPKEDLVVSASLDQTVRVWDIGALRKKTVAPADDIMR
LSQMNADFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCVLFHSRQDIIVSNSEDRSIRVWDATKRTGLQTFRREHDRFWILSAHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDSMYYVKDRFLRFYEFSTQRDSQVIPIRRPG
SSNLNQGAKTLSYSPTENAVLIGSDTEGGSYELYIIPKDSFGRGDTMQEAKRGIGGPAVF
VARNRFAVLEKSTNQVIVKNLKNEIVKKSALPIVADAIFYAGTGNLLCRAEDRVIIFDLQ
QRIIVGELQTPFVRYIVWSNDMESVALLSKHSIVIANKKLVHQCTLHETIRVKSGAWDDN
GVFLYTTLNHIKYCLPNGDSGIIRTLDIPVYITKVYGNTIHCLDRDGKNCAIVVDATEYV
FKLSLLKKRYDQVMSMIRSSELCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALGSGNI
QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLVTGNLDKLSK
MLKIAEVKNDVMGQFHNALYLGDIRERVKILENAGHLPLAYSTAVIHGLHDIAERLAAEL
GDNVPVLPKGKSPSLLIPPTPIICGGDWPLLRVMRGIFEGGLDNVGKNVEEEYEEATDAD
WGEDLDIVDVDKIPNGDISAVLDDEEAHEENEEEGWDLEDLELPPEIDTPKTASNARSSV
FVAPTPGMPVSQIWSQKSSLAAEHAAAGNFDIAMRLLSRQLGIKNFDPLRQLFLDLHMGS
HTYLRAFSTAPVLTVAIERGWSESATPNVRGPPALVFKFSELEEKLKVGYKATTQGKFAD
ALRIFLGILHTIPLIVVDSRREVDEVKELIIIVKEYVLGLKMEIKRKELKGDPVRQQELA
AYFTHCNLQIPHLRLALLNALSVCYKAGNLNTAANFARRLLETNPSVENHAKTARQILQA
AEKNMTDATQLNYDFRNPFVVCGGTYVPIYRGQKDVSCPYCSSRFVPDHEGKICSVCDLA
VVGSDASGLLCSPTQIR
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgaaattcgagaccaagagtaatcgggtgaaagggctgagctttcaccccaag
cggccatggatcttggccagtctccacagcggtgtgatccagctctgggattaccgaatg
ggcactctcatcgaccgttttgacgagcacgatggccctgtacgtggcgtccatttccac
tcctctcagccgcttttcgtctccggaggggatgattacaagatcaaggtatggaattac
aagttgcataggtgtttgtttacacttcttggacaccttgattacatccgaactgttcaa
ttccatcatgagtatccgtggattgttagtgcgagtgatgaccagacaattagaatatgg
aattggcagtcccgaacttgtatttctgtgctcactggacacaaccattacgtcatgtgt
gccttattccatccaaaggaggatcttgttgtctcagcatcattggatcaaactgttcgt
gtttgggatattggtgccctcaggaaaaagacggttgccccagcagatgacatcatgcgc
ttgagtcagatgaatgcagatttctttggtggagttgatgctgttgtgaagtatgttttg
gaaggtcatgatcggggtgtgaattgggcatcatttcatcctacactccctctgatcgtc
tctggagcagacgatcgacaagtgaaactttggcggatgaatgatacaaaggcttgggaa
gtggacactctaagggggcacatgaacaatgtatcctgtgttctattccattcaaggcag
gatattattgtgtccaattcagaggatagaagtatccgagtctgggatgcaacaaaacga
actggtcttcagacatttcgtagggagcatgataggttctggattctttcagcacatcct
gaaatgaacctcttggctgctgggcatgatagtggcatgattgtctttaaattggagagg
gagcgtcctgctttttctgttagcggtgattcaatgtactatgttaaagatcgttttctc
cgcttctatgagttctccacccagagagacagtcaggttatcccaattcgaaggcctggt
tcttccaacttgaatcaaggggcaaaaacactatcttacagccctaccgaaaatgctgtt
ttgataggttcagatacggaagggggttcttatgaactatacattatacccaaagatagc
tttggtcggggtgatactatgcaggaggcaaaaagaggaatcggaggcccagctgtgttc
gtggctcgcaataggtttgcagtgcttgaaaagagcaccaaccaagttatagttaaaaat
ctgaaaaatgagattgtcaagaagagtgccctacctattgttgctgatgcaatattttat
gctggaactggaaacttgctctgcagggcagaggacagagtcattatttttgacctgcag
cagagaattattgttggagagcttcaaactccttttgtaaggtatattgtttggtcaaat
gacatggagagcgttgctttacttagcaaacattcaattgtgatagccaataagaagctt
gtgcatcagtgcactctccatgagacaattcgtgtaaagagtggagcttgggatgacaat
ggcgtcttcctatatacaaccttgaaccacatcaaatactgccttcctaatggggatagt
ggaatcatcaggacccttgacattccagtgtacataacaaaagtgtatggaaacaccata
cattgcttggatcgagatgggaagaactgtgccattgttgttgatgcaacagaatatgtt
ttcaagttatccttactgaagaaaaggtatgaccaggttatgagcatgattaggagttct
gagctctgtggccaggccatgattgcatatctacagcagaaaggtttccctgaagttgct
cttcattttgtgaaggatgagaggactcgcttcaacttggcactagggagtgggaacatc
cagattgctgttgcttctgccaaggaaattgatgagaaagatcactggtatcgattggga
gtggaggccctacgtcagggtaatgcaggcattgtagaatatgcgtatcagaggacaaag
aattttgagaggctatcattcctatatcttgtgactggaaacttggataaattatctaaa
atgctgaaaattgctgaagtcaagaatgatgtgatgggtcagttccacaatgctttgtat
ttgggtgatatcagagaacgtgttaagatcttggagaatgcaggtcatttacctcttgct
tatagcacagctgtaatccatgggctccatgatattgctgaacgtttggcagctgaactg
ggagataatgttcctgttttacccaaggggaaatctccctctcttttgatacctcctacg
ccaatcatctgcggtggagattggcccttgttgagggtcatgagaggaatatttgagggt
ggtcttgataatgtgggcaagaatgttgaggaagagtatgaagaggctacagatgctgat
tggggagaggatttggatattgttgatgtggacaagattccaaatggagacatcagtgca
gtgctggatgatgaggaagcacacgaggaaaatgaggaggaaggatgggatcttgaagat
cttgaacttccacctgagattgatactccaaaaactgccagcaatgcccgttcttctgtg
tttgttgccccaactccaggtatgcctgtaagtcaaatctggtcccagaaatcatctctg
gctgccgaacatgctgcagctgggaatttcgatattgcaatgcgtttgttgagcaggcag
ctgggtataaagaactttgatcccttaagacaattatttctcgatttacacatgggcagt
catacgtatctacgtgccttctcgacagctcctgtgcttaccgtggccattgagagggga
tggagtgaatcagctactcctaatgttaggggtcctcctgctcttgtatttaaattctct
gagctagaagagaagcttaaggtgggttacaaggccacaacccaagggaaatttgctgat
gctttacgtattttccttggtattctgcatactattcctctgattgtagttgattcaagg
agagaggttgatgaagtaaaagaattaataatcattgtaaaggagtatgttctgggtttg
aagatggagattaagaggaaggaacttaaaggcgatccggttcgccaacaggagctagca
gcttacttcacccactgcaaccttcagatccctcacttgaggctagcattactaaatgcc
ctgagtgtttgctataaggctggtaatctcaacacggcagctaactttgccaggcgactt
ttggagaccaatcccagcgttgaaaaccatgcaaagactgcaagacaaatcctgcaagct
gccgaaaagaacatgactgatgcaacccagctaaactatgatttcagaaacccatttgtg
gtttgtgggggaacatacgtgcctatttaccgtggacagaaggatgtgtcatgcccgtac
tgcagctctcggtttgttcctgaccatgaagggaagatctgttctgtttgtgatcttgca
gtggttggatcagatgcatctggtttgctctgctctcctacccagataagatga
DBGET
integrated database retrieval system
