Malus sylvestris (European crab apple): 126625206
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Entry
126625206 CDS
T09027
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126625206
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
126625206
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
126625206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
DExH14_plug
ResIII
Helicase_C
AAA_22
DEXQc_Suv3
Helicase_PWI
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-GeneID:
126625206
NCBI-ProteinID:
XP_050150253
LinkDB
All DBs
Position
6:complement(32016237..32033326)
Genome browser
AA seq
2087 aa
AA seq
DB search
MLVQLPRLTSSLREPFDVDQAYLQRKILLQSRHKPPQPSSSVDESELARKIIHRWEEASV
EVRQAYKQFVGAVVELIDGEVSSEEFREVALAMYRLFSSPAEEANVETIIAREKLEVQNL
LGQAVSDANMRKVVSLAQRLCGMQSSDGGTALPENPVSGTDDNAEFGADLVFHAPARFLV
DVSLEDGELLGEESTSSTSYYEGLYSRNDLNDHQPTSNGQSFNLSWLQDACDRIITKSTS
QLSGDELAMAICRVLDSDKSGDEIAGDLLDLVGDSAFETVQDLISHRKELVDAIHQGLLG
LKSDKLSSSSQPRMPSYGTQVTVQTESERQIDKLRRKEEKRQRRGTEYGADSDLAGVNFS
SLVQASERKKPVDGLLGYGEAHSLAVSALPQGTVRKHHKGYEEVIIPPTPTAQMKPSEKL
IDITELDEFAQAAFRGYKSLNRIQSIIFHTVYNTNENILVCAPTGAGKTNIAMISILHEI
GQHFKDGYLHKDEFKIVYVAPMKALASEVTSTFSHRLSPLNMTVKELTGDMQLSKNELEE
TQMIVTTPEKWDVITRKSSDMALSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVEST
QTMIRIVGLSATLPNYLEVAQFLRVNPDAGLFFFDASYRPVPLAQQYIGISEQNFAARNE
LMNEICYKKVVESLRQGYQAMVFVHSRKDTAKTAQKLVELARKFEGLDLFKNDEHPQFSL
VQRDVKKSRNKDLVALFEFGVGVHHAGMLRSDRGLTERLFSDGLLKVLVCTATLAWGVNL
PAHTVVIKGTQLYDPKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLR
LLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLVYGIGWD
EVVADPSLGLKQRSLIADAARSLDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETY
NECLRRHMNETEVIDMVAHSSEFENIVVRDEEQHELEALVRSSCPLEVKGGPSNKHGKIS
ILIQLYISRGSIDTFSLVSDAAYISASLARIMRALFEICLRKGWSEMSLFMLDYCKAVDR
QVWPHQHPLRQFDKDLSGEILRKLEEREADLDRLYEMEEKDIGALIRYGPGGRLVKQYLG
YFPWIQLSATVSPITRTVLKVDLLITPDFIWKDRFHGTSQRWWILVEDSENDHIYHSELF
TLTKRMAKGEPQKLSFTVPIFEPHPPQYYIRAVSDSWLRSEAFYTISFQNLALPEAHTSH
TELLDLKPLPVTSLGNNSYEALYRFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGKTISA
ELAMLRLFNTQPDMKVIYIAPLKAIVRERMNDWKRRLVSQLGKEMVEMTGDYTPDMMAIM
SADIIISTPEKWDGISRNWHSRDYVKKVGLMIMDEIHLLGADRGPILEVIVSRMRYISSQ
TEREVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMN
SMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSMPEDDLQMV
LSQVTDNNLRHTLQFGIGLHHAGLNDRDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHL
VIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYE
PFPVESSLREQLHNHINAEIVSGTICHKEDALHYLTWTYLYRRLMFNPAYYGLDNAEAEV
VNSYLSRLVQNTFEDLEDGGCIEMNEDSVEPTMLGSIASQYYLSYMTVSMFGSNISSDTS
LEVFLHILSAASEYNELPVRHNEENYNGALAERVRYRVDKDRLDDPHIKANLLFQAHFSQ
LELPISDYVTDLKSVLDQSIRVIQAMIDICANSGWLSSSVTCMHLLQMVMQGLWFDKDSS
LWMMPCMNVELADSLSKRGIFSVQQLLNLPKATLQTMIGNFPASKFFQDLQHFPRIEMKL
RIQEKDSGKSHSLNIRLVKTNYRQNKSRAFTPRFPKVKNEAWWLVLGNTSTSELYALKRV
SFSDHLVTHMELPAAPNNIQGMKLILVSDCYLGFEQEHSIAELIQRR
NT seq
6264 nt
NT seq
+upstream
nt +downstream
nt
atgttggttcaacttccgcggctgaccagctctctcagagagccctttgacgtcgatcag
gcctatttgcagcggaagatcctcctccagagccgccacaaaccgccccagccttcgagc
tcagttgatgagtcggaacttgctaggaagataattcatagatgggaagaagcttcggtt
gaagtgcggcaagcgtacaagcagtttgtcggagcagtggttgaattgatagatggagaa
gtttcctccgaagagtttcgtgaggtggcactggctatgtaccgccttttcagctcgcca
gcggaggaagccaatgttgaaacaattattgctagggaaaagctggaagtgcaaaactta
cttggtcaagccgtttcggatgctaacatgcggaaagttgtctcccttgcccagagactt
tgtgggatgcagtctagtgatggggggactgcgcttccagaaaaccctgtaagtgggact
gatgacaatgcagaatttggcgctgaccttgttttccatgcaccagctcggtttctggtg
gatgtttctttggaggatggggagctattgggtgaggaaagcacttcttctacatcatat
tatgaaggattatatagtcgcaatgacttgaatgatcatcaacctacttccaatggacaa
agcttcaacttgagttggttacaagatgcatgtgatcggataataacaaaaagtacttca
cagctttctggagatgaattggctatggccatctgtcgggttcttgactctgacaaatct
ggtgatgagatagcaggtgacttgttagatcttgttggggatagtgcgtttgaaactgtc
caagacctcatatcacatcgaaaggaactcgttgatgccatccatcaagggctactggga
ctgaaatctgataaattatcttcaagctctcaaccacgtatgcctagttatggcacacag
gttactgttcaaacagaatctgaacggcaaattgataaacttcggcgcaaagaggaaaag
cgacaaagacgaggaacagaatatggcgctgatagtgatctggctggtgtaaatttttct
tctctagtacaagcaagtgaaagaaaaaaacctgttgatggtctcttagggtatggtgaa
gctcactctttagcagttagtgctcttcctcaaggaacagtgaggaagcatcataagggg
tatgaggaagtcattattcccccaacaccaacagcacaaatgaaaccaagtgaaaagctg
attgacataacagagttagatgaatttgctcaagctgcttttcggggatacaaatctttg
aaccgtattcagagcatcatatttcatactgtttataacactaatgaaaatatactagtt
tgtgctccaacaggagctggtaagacaaacatagctatgatttctattctacatgagatt
ggacagcacttcaaagatggttacttgcataaagatgaatttaaaatagtttatgttgca
cctatgaaggcattagcttcagaagtcacatcaacttttagccatcgcttatctccattg
aatatgactgtgaaagaactcaccggcgacatgcaactatctaagaatgaacttgaagaa
actcagatgatagttactacacctgaaaaatgggatgtcattactcgcaagagcagtgac
atggcactttcaatgctcgtgaagcttttaattattgatgaagtgcatctattgaatgat
gacaggggccctgtaattgaggcactagttgctcggactttgcgccaggtggaatctaca
cagacgatgatacgcattgttggcctttcagccactctacccaactatttggaggttgca
cagtttctgagagtgaatccagatgcaggactcttcttttttgatgctagttatcgtcct
gtgccccttgcacagcagtatattggtattagtgagcagaactttgcagcccgaaatgaa
ttaatgaatgagatatgctacaagaaggttgttgaatcactcaggcaagggtatcaggca
atggtattcgttcattctcgaaaggacacagcaaaaacagctcagaaattggttgaactt
gctcgcaagtttgaaggactggatcttttcaagaacgatgaacacccacagttttcattg
gttcagagggatgttaagaagtccagaaacaaagatcttgttgcactttttgaatttgga
gttggagttcatcatgctgggatgttacggtctgatagaggtctgactgagcgccttttc
tctgatggactattgaaggtgcttgtttgtacagcaactttggcatggggtgtaaatcta
ccagctcacactgttgtgataaaggggactcaattgtatgatccaaaggctggtgggtgg
aaagacctgggcatgctagatgttatgcagatctttgggcgtgctgggagacctcaattc
gacaaaagtggtgaaggcattataattacgtctcacgacaaactggcctactatcttcgg
ttgctgacaagtcaacttcctatagaaagtcagtttattagttccttgaaagacaattta
aatgcagaggtggcacttggtactgtcaccaatgtcaaggaagcttgtgcatggcttgga
tatacatacctttttataagaatgaggctgaaccctttggtgtacggtattgggtgggat
gaggttgttgcagatccttccttgggcttgaagcaaagatctctgattgcagatgctgca
cgttccctggacaaagcaaaaatgatgcgatttgatgaaaaaagtggcaacttttattgt
acagaacttggtcgaattgcaagccacttttatattcaatactcaagtgttgaaacgtac
aatgaatgtttgagacgccacatgaatgagactgaggtaattgatatggtagcccactcc
tcagaatttgaaaatattgttgttcgagatgaggaacagcatgaacttgaggcgttggtg
cgatcatcatgccctttagaagttaaggggggtccttcaaataaacatggaaagatttcc
attctcattcagttgtacatatctcgtggctcaatcgataccttttccttggtttctgat
gctgcatatataagtgcaagcttggcacgcattatgcgggctttatttgagatttgctta
cgaaaaggctggtctgagatgtcgttgttcatgttggactattgtaaggctgtggatcgc
caagtttggccccatcagcatcctctcagacaatttgacaaggatctttcaggagagata
ctgcgaaagcttgaagaacgagaggctgacttagatcgcctatatgagatggaggaaaaa
gacattggagcattgattcgctatgggcctggaggaaggttggtcaagcaatatttggga
tattttccatggatccagttgtccgcaactgtgagtccaatcaccagaactgttttaaag
gtggatttacttattacaccagacttcatatggaaagatcgttttcatggcacatcccaa
cgttggtggattctcgttgaggattcggagaatgaccacatctaccattcagagctattt
actctgacaaagcggatggctaagggggaacctcagaagctttcttttactgtgccaata
tttgagccacatccaccacagtattatatccgtgctgtttcggattcttggttgcgttca
gaggctttctacaccatatctttccagaatctagcactgccagaggctcatacttcacat
acagaactgctagatttgaaacctctccctgtgacttcacttggcaacaattcatacgaa
gcattgtacagattctcacactttaatccgatacaaacacagactttccatgtcttgtat
cacacagacaataatgttttgttaggagctcccactggaagtgggaaaactatatctgcc
gagcttgctatgcttcgtctcttcaatacccagcctgatatgaaggtcatttacatagca
cctttgaaggctattgttcgggaaagaatgaatgattggaaaagacgccttgtctctcag
ctagggaaagagatggttgaaatgactggtgattatactccagatatgatggccattatg
tcagcggatatcataatatctactcctgagaagtgggatggtatcagccgtaattggcat
agtcgagactatgttaagaaggttgggcttatgatcatggatgagattcacttgttggga
gctgaccgtggacccatccttgaggttattgtgtcaaggatgagatacatatcatcacag
acagagcgtgaagtacgatttgtaggcctttctacagctttagcaaatgcaggggatttg
gctgattggttgggtgttggggaaattgggctcttcaattttaaaccaagcgtgagacct
gtacctcttgaagttcatatccagggataccctggaaagttctattgcccaaggatgaat
agcatgaacaaaccagcatatgctgcgatatgcacccactcacctacaaaaccagtttta
atatttgtttcttctcgtcgacagacaaggcttactgcattggacctcattcagtttgca
gcttcagatgaacatccaaggcagtttcttagtatgccagaagacgacctgcagatggtg
ctttctcaggtcactgataataaccttaggcacaccttgcaatttggcattggattacat
cacgctggtctgaatgacagggatagatctctagttgaagagctttttgcaaacaacaag
attcaggtattggtttgtacgagcacattggcatggggtgtaaaccttccagctcatcta
gtcatcattaagggaacagaatattatgatgggaaagcaaaaagatatgttgattttcca
atcacagatatcttgcaaatgatgggtcgtgctggccggccacaatttgatcagcatggg
aaagcagtcattcttgttcatgaacccaaaaagagcttctataaaaagttcttatatgaa
ccatttcccgtcgagagtagtctgagggaacagttgcataatcacatcaacgctgagata
gtttctggcacaatttgccataaagaggatgcgctgcattatcttacctggacatattta
taccgtagactgatgtttaatccagcttactatggcttggacaatgctgaagctgaagtt
gtaaattcttacttgtctaggctagtgcagaacacatttgaggatctcgaagacggtgga
tgcatcgagatgaatgaagacagtgtggagccaacgatgctgggttcaatagcatcccag
tattaccttagctacatgactgtatcaatgtttggttcaaacataagttcagatacgtcg
cttgaagtgttcttgcatatcctatcggctgcttctgaatataacgaacttcctgtgcgg
cacaatgaggagaattacaatggagcgttggctgagagagttcgatatagagtggacaag
gaccggttagatgatccacatatcaaagccaatcttctgtttcaggcacatttctcgcag
ttagaattaccaatcagtgattacgtcacagacttgaagtcggtactggatcaaagtata
cgggtcatccaggccatgatagatatatgtgccaacagcgggtggctttcaagctcagtt
acttgcatgcatcttctgcaaatggtcatgcagggtttatggtttgataaggattcttcc
ttgtggatgatgccatgcatgaatgttgaactcgccgactcactaagcaaaagaggaata
ttcagcgtgcagcaactactgaatctccccaaggcaactttgcagaccatgatcggaaac
ttcccggcttcaaagttttttcaggatctgcagcattttccccgcatcgaaatgaagtta
agaattcaggaaaaggacagcggaaagtctcactctttaaacatcagattggttaagacc
aattacaggcaaaacaaatcaagagcgtttaccccgcgatttcctaaggtgaaaaacgaa
gcgtggtggttggtccttgggaacacctcaacatctgaattatatgctctgaagagagta
tccttctctgatcacttggttactcacatggagttaccagcagctccgaataatatccag
gggatgaaattgattttagtttcggattgttatttgggcttcgagcaagagcactctatc
gcggaacttattcaacggcggtga
DBGET
integrated database retrieval system
