Malus sylvestris (European crab apple): 126625222
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Entry
126625222 CDS
T09027
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1-like
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
126625222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126625222
03036 Chromosome and associated proteins [BR:
msyl03036
]
126625222
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
126625222
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
126625222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
WD40
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_EIPR1
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR41
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
EIF3I
MIOS_WD40
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
126625222
NCBI-ProteinID:
XP_050150269
LinkDB
All DBs
Position
1:complement(29382195..29384889)
Genome browser
AA seq
342 aa
AA seq
DB search
MENSTQESHLRAENSVTYESPYPLYAMAFASPQTRTRHQHHRIAVGSFIEEYSNRVDILS
FDPDTLSIKPNPTLSFDHPYPPTKLMFHPNPNALHKTNDVLASSGDYLRLWEVGDSTVEP
IQVLNNSKTSEFCAPLTSFDWNDIEPRRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEVY
DIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATIL
MDSNKVVILDIRSPTMPVAELERHRGSVNAIAWAPQSCRHICSAGDDTQALIWDLPTVAG
PNGIDPMSMYSAGAEINQLQWSAAQPDWISIAFSNKMQLLKV
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggagaactctacgcaagaatcccatctcagagcggagaactcggtgacgtacgagtcg
ccgtacccgctgtacgccatggcctttgcctcgccccaaacccgaacccgccaccagcac
caccgaatcgccgtcggcagctttatcgaggagtactcgaaccgggtcgatatcctttcc
ttcgacccggataccctttcaataaagccgaacccgaccctctccttcgaccacccttat
ccgcccaccaagctcatgttccacccgaaccccaacgccctccacaaaaccaacgacgtc
ttagcttcctctggcgactacctccgcctttgggaggtcggcgactccaccgtcgagcct
atccaggtgttaaacaacagcaagaccagcgagttttgcgctccgctgacgtcattcgat
tggaacgacattgagccccggcgaattgggacttccagcatcgacaccacctgcacaatt
tgggacatcgaaaagggtgtcgtcgagacgcagctgattgctcacgataaagaggtgtac
gacatcgcgtggggggaagctagggtttttgcttcggtttcggctgatgggtcggtgaga
attttcgatttgagggacaaggagcactccacgatcatctatgagagccctcagccggat
acccctttgcttcgattggcttggaacaagcaggatttgaggtacatggccacaattttg
atggacagcaataaagttgtgatcttggatatccgatcgccgacgatgccagtggcggag
ctggagaggcacagaggtagtgtgaatgctattgcttgggccccccagagttgtaggcac
atttgctctgctggggatgacactcaggcgcttatttgggacctgcccacggtcgctggg
ccgaatggaatcgaccccatgtcgatgtactccgcaggtgcggagattaatcagctgcag
tggtctgctgcacagcctgattggatttccattgcattttctaacaagatgcagcttttg
aaggtttga
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integrated database retrieval system
