Malus sylvestris (European crab apple): 126625242
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Entry
126625242 CDS
T09027
Name
(RefSeq) transcription initiation factor IIB-like
KO
K03124
transcription initiation factor TFIIB
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
126625242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126625242
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
126625242
Prokaryotic type
Archaeal type
TFB
126625242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
WHD_GDS1
Ribosomal_S27e
Hexokinase_2
DUF6398
Motif
Other DBs
NCBI-GeneID:
126625242
NCBI-ProteinID:
XP_050150290
LinkDB
All DBs
Position
6:30828469..30831642
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AA seq
313 aa
AA seq
DB search
MSDTFCRDCNSLTEVVFDHRAGDAICSECGLVLEAHSVDETAEWRSFADDSNDNDPNRVG
GPVNPLLSEAGLSTVIARPKNGGGGGSSEALPSSVGKWQGRASKPGRHLLDIFGAIAVMA
DRLGLVTTIKDRANEIYKKVEDQKPLRGRNQDAIVAACLYIACRQENKPRTVKEICTAVS
GATKKEIGRAKEFIWKHLEAELGLEMGTIHAGDYLRRFCSNLGMKNRDVKAAQEMVQNTE
ELVIRRSPISVAAAVIYTINQLADEKKSLKDISVATRVAEGTIKNSYRDLHPHLARIIPN
WFANEECVKNLQP
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacacgttttgccgcgactgtaacagtctgacggaggttgtcttcgaccacaga
gcgggcgacgcgatatgctccgagtgcggcctcgtactggaggcacactccgtcgacgag
accgccgagtggcgctccttcgccgacgactctaacgacaacgacccgaaccgtgttggc
ggacccgttaacccgcttttgtcagaagctgggctttctaccgtcattgccaggcccaaa
aacggcggcggcggcggctcctctgaagccttgccatcctccgtcgggaagtggcaggga
cgcgcgtctaagcctggccgtcatcttctcgacatcttcggtgcaattgccgtgatggcc
gacaggttgggacttgttacaaccataaaggatcgagccaatgaaatatacaagaaggtg
gaagatcaaaaacctctccgagggcgaaatcaagatgcaattgtggctgcttgcctctac
attgcctgcagacaagaaaataagcctcgtactgtgaaagaaatatgcactgcagtcagt
ggagctaccaagaaggaaattggacgggcaaaagagttcatctggaaacacctggaggcc
gagcttggtctggaaatgggaactatccatgctggagattatttgcgacgcttctgttcc
aatcttggaatgaagaatcgagatgtcaaggctgcccaagaaatggtgcagaacactgaa
gagctcgttataaggaggagccctatatcggtggcagctgccgttatttataccatcaat
caactagcggatgagaaaaagtcactcaaagatatctctgttgctactcgagttgctgaa
gggacgatcaagaattcctacagagacctgcatcctcatctggcaagaataataccgaac
tggtttgccaacgaggaatgtgtcaagaatctgcagccctag
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integrated database retrieval system
