Malus sylvestris (European crab apple): 126625787
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Entry
126625787 CDS
T09027
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03030
DNA replication
msyl03420
Nucleotide excision repair
msyl03430
Mismatch repair
msyl03440
Homologous recombination
msyl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
126625787
03420 Nucleotide excision repair
126625787
03430 Mismatch repair
126625787
03440 Homologous recombination
126625787
03460 Fanconi anemia pathway
126625787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msyl03000
]
126625787
03032 DNA replication proteins [BR:
msyl03032
]
126625787
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126625787
Transcription factors [BR:
msyl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
126625787
DNA replication proteins [BR:
msyl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
126625787
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
126625787
MMR (mismatch excision repair)
126625787
DSBR (double strand breaks repair)
HR (homologous recombination)
126625787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
126625787
NCBI-ProteinID:
XP_050150820
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All DBs
Position
6:32150030..32153409
Genome browser
AA seq
635 aa
AA seq
DB search
MAKLGPTPDAISIILANKSPDESVELPEIVVQVCDLTPRGKSFMFTATDGTAKLKGMLSS
RLAPQVTSGEIQNLGLIRVLGYSVNFNSNLSENYLLVTKCEVVSPALEAEVKNEVKREDV
GIILNPKQEMVSESAAQIVHEQAGKVKKEDVGVILKPKQEMVSKSAAQIVHEQAGNMAPS
ARMAMTRRVHPLVSLNPYQGNWTIKVRVTNKGTMRTYKNARGEGCVFNVELTDQDGTQIQ
ATMFNEAAKKFFEKFELGKVYYISKGSLRVANKQFKTVQNDYEMTLNENSEVEEASNEAA
FVPEVKFNFVPIDMLGPFVNGKELVDVIGVVQNVSPTMSIRRKSNNESIPKRDITIADET
KKTVVVSLWGELATGVGQELLDIADQSPVVAIKSLKVGDFQGVSLSTLSRSTILVNPELP
EAQKLRSWYDSEGKESSLASIGSGMSPSAKNGGRSMYSDRVTLSHISEDPSLGEDKPVFF
SVKAFISSIRPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDEECSLRYILVVRVTDV
SGETYLSLFNDEAERVLGCSADELDKLKSQDGDGNEFQQKLKEATWVPHLFRVSVTLNEY
NNEKRKRITARAVAPVDFAAESRFLLEDISKMKAS
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagttagggccaaccccagatgcgatttcgatcatcttggcgaacaagtcgccg
gatgagtccgttgagctgccggagatcgtggttcaggtctgcgatctcacccccaggggc
aagtctttcatgtttactgctactgatggaactgcgaagctaaaggggatgctctcctcg
cggctggctccccaggtcacctctggggagattcagaatctgggtctcattcgcgttttg
ggttactctgttaatttcaattcgaacttgtccgaaaactatctgcttgtaacaaaatgt
gaggtggtttcgcctgcgcttgaggcggaggtgaaaaatgaggtcaaaagggaagatgtt
gggatcatattgaatcccaagcaagaaatggtttcagaatctgctgcccaaattgtgcat
gagcaggctgggaaggtcaaaaaggaagatgttggggttatattgaagcccaagcaagaa
atggtttcaaaatctgctgcccaaattgtgcatgagcaggctgggaatatggccccatct
gcgagaatggctatgacacgaagggttcacccgcttgtttccttgaacccttaccaagga
aattggaccataaaggttcgagttacaaacaagggtaccatgcgtacatacaagaatgct
agaggtgaaggttgcgtcttcaatgtggagttaacagatcaagatggcacccaaattcaa
gcaacaatgttcaatgaagctgcaaagaagttctttgagaagtttgagttagggaaggtt
tattacatttcaaagggatctctgagggttgctaacaagcagtttaagacggtgcaaaat
gattatgaaatgactttgaatgagaattctgaggtggaagaagctagcaatgaagcagct
tttgttcctgaagtaaaattcaattttgtgcccattgatatgttgggtccttttgttaat
ggaaaggagcttgtggatgttattggggttgttcaaaatgtgtctcctacaatgagcatt
agaaggaagagcaacaatgagagtattccaaagcgtgatatcaccattgctgatgaaacg
aagaagacagttgtggtttctttatggggtgagctcgcaactggtgtaggccaggaattg
cttgacattgctgatcaatctcccgtagttgctatcaagtccctcaaagttggagacttc
caaggtgtatcgttgtcaacattgagcaggagcacaatattggttaatccagagttacct
gaagcacagaagttgaggtcttggtatgattctgaaggtaaagaatcttctttggcctct
attggctctggtatgagcccttcagccaagaatggaggaaggtccatgtactctgacaga
gtcaccctgtctcatatatctgaagacccgtccttgggtgaggataagcctgtgtttttc
agtgttaaagcgttcataagttcgatcaggcctgatcagacaatgtggtaccgtgcttgc
aaaacttgtaacaagaaagtgactgaagctattgggtctggttattggtgtgaagggtgc
cagaaaaacgatgaagaatgcagtttacggtacatattggttgtgagagttactgatgta
agtggggaaacgtatctttctcttttcaatgacgaagctgagagggtcctcgggtgctct
gcagatgaactggacaaattgaaatcacaggacggagacgggaatgaattccaacaaaaa
ctgaaagaagcaacttgggttcctcatctttttagggtcagtgttactctgaatgagtac
aataacgagaagcggaagaggataactgccagggcagttgctccagttgattttgctgct
gaatcgaggtttttgcttgaagacatatcgaagatgaaggcgtcataa
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integrated database retrieval system
