KEGG   Malus sylvestris (European crab apple): 126625810
Entry
126625810         CDS       T09027                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4-like isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03020  RNA polymerase
msyl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    126625810
  09124 Replication and repair
   03420 Nucleotide excision repair
    126625810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:msyl03021]
    126625810
   03400 DNA repair and recombination proteins [BR:msyl03400]
    126625810
Transcription machinery [BR:msyl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     126625810
DNA repair and recombination proteins [BR:msyl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      126625810
SSDB
Motif
Pfam: RNA_pol_Rpb4 EzrA
Other DBs
NCBI-GeneID: 126625810
NCBI-ProteinID: XP_050150853
LinkDB
Position
6:34289118..34290939
AA seq 138 aa
MLRAEDEDASELKLGDDFLKAKCLMNSEVAILLEHRCDQMKHMSGESMHQLPQVLEKSLQ
YVKRFSRFTNQGSVKQVREVLSRYQLAEFELAVIGNLCPETVEEAKAVVPSLKTKGRGHD
DEAIDRLLNDLMMIKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgctaagagcagaagatgaagacgcttcagaactcaaacttggagacgattttttgaag
gcaaagtgtctaatgaatagtgaggttgccattcttcttgagcatagatgtgatcagatg
aagcatatgtccggcgaatcaatgcaccaacttccccaagtgttggagaaatcactgcag
tatgttaagcgctttagtcgcttcacgaatcagggctctgtgaagcaagttcgagaagtt
ctcagtagataccagttggctgaattcgagcttgctgtgattggaaatctttgtcctgaa
actgtggaggaagccaaggcagttgtgccttctctcaagacgaaaggacgtgggcacgac
gatgaagccattgacagactgttgaatgacctaatgatgattaaaaagtttgagtga

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