Malus sylvestris (European crab apple): 126625816
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Entry
126625816 CDS
T09027
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04120
Ubiquitin mediated proteolysis
msyl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
126625816
04120 Ubiquitin mediated proteolysis
126625816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126625816
Enzymes [BR:
msyl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
126625816
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
126625816
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
FlxA
zf-RING_16
zf-ANAPC11
zf-RING_5
zf-RING_11
DUF5320
zf_RING_Vps8
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
126625816
NCBI-ProteinID:
XP_050150869
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Position
1:complement(29813145..29816833)
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AA seq
544 aa
AA seq
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MMKLQTYAGISLVATLAIVYHAFSSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCTMWQL
TKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLA
QKRVEYIETTPSVPMLSHVRIVSFLGFLLVLDSLFLYSSVSNLIRTQKASVSLFFSFEYM
ILATTTVSTFVKYVFYVTDMLKEGQWEKKPVYTFYLELIRDLLHLSMYLCFFLAIFTYYG
VPLHLIRELYETFRNFKLRIADYIRYRKLTSNMNDRFPDATPEELNASDATCIICREEMT
TAKKLLCGHLFHVSCLRSWLERQHTCPTCRALVVPPDSGTGTAGGHRGSQSDAHQQGTGT
MAQGAGVAGDSVSQHEARLRAAAAAASIYEKSHVYASANRLVWSPGYAALPQVQRHTADS
PNTESSGEASSGQSRPQLATPAGAANLSFSQFPPYMFVPGANVAYGGRLSSDPNLTASQL
EAQKKFLQAQIEILQNQLQVLQKPKPKESVDMGPTGASLDGKGKSVAAPSSVSDCGRHED
RVDT
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagctgcaaacctatgccgggattagtttggtagcaaccctagcgattgtttat
catgcatttagtagtagaggtcagttttatccggcaatggtgtatttgtcgacgtcgaag
atcagcttggtgttgcttctcaacatgggtctggtcattatgtgtactatgtggcaattg
actaaaaagatcttccttggatcactccgggaagccgaggtggagaggcttaacgagcaa
tcgtggcgggaagtcatggaaatcctctttgccatcactatattcaggcaggacttttcg
gtctcgtttcttgctatggttactactctcttgttgatcaaggctttgcattggttggct
cagaagagggttgagtacatcgagactactccttccgtgcccatgctgtctcatgttcgg
attgtctcctttttgggtttcttgcttgttctagatagtctctttttgtacagttctgtt
agcaacttgataaggacacaaaaggcctcggtttccctcttcttttcattcgagtacatg
atactagcaacaacaacagtgtcaacatttgtgaaatatgttttctatgtaactgacatg
cttaaggagggacagtgggagaagaagcctgtctacacgttctacttggaacttattcgg
gacttgcttcatttgtctatgtatttgtgcttcttcctcgcgattttcacgtactatggt
gtgccactgcacttgatacgtgagctttatgaaacatttaggaactttaagcttcgcatt
gctgattacattcgttatcgaaagctcacatcaaacatgaatgatcgattcccagatgct
acgcctgaagagcttaatgcaagtgacgcaacttgtatcatttgccgtgaagagatgaca
acagccaagaaactattatgtggacacctttttcatgtgtcttgccttcgatcatggtta
gagcgacagcatacctgccctacttgcagggctctagttgtacctcctgacagtgggaca
ggtacagctggcgggcataggggctcacagtcagatgctcatcaacaggggacaggcaca
atggctcagggtgctggagttgctggtgatagtgtgagccaacatgaagcgaggctccga
gctgctgctgctgctgcatcaatatatgagaagtctcatgtatatgcttctgcaaacaga
ctagtatggtctcctggatatgcggcacttcctcaggttcaaagacatacggctgactcc
cctaatactgaatctagtggagaagcttctagtggacaatcacggccccagcttgcgacc
cctgctggagctgcaaacttgtccttctctcagtttccaccttacatgtttgttcctggg
gccaatgtggcctatggggggaggctgagcagcgatccaaatctgacagcttctcagctg
gaggcccagaaaaagtttcttcaggcccagatagagatactgcagaatcagctccaagtt
ttacagaaaccaaaaccaaaggaaagtgtggacatgggtccaacaggggcatctttggat
ggcaaaggaaagagcgttgcagctccctcatctgtttcagattgtggacgtcatgaagat
cgggttgatacgtag
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