Malus sylvestris (European crab apple): 126625952
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Entry
126625952 CDS
T09027
Name
(RefSeq) protein SPA1-RELATED 2-like
KO
K16240
protein suppressor of PHYA-105 1 and protein SPA1-related 2
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
126625952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126625952
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
126625952
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML_2
EIF3I
Beta-prop_EIPR1
Beta-prop_TEP1_C
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
Beta-prop_EML
Pkinase
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF12
WD40_like
WD40_MABP1-WDR62_1st
eIF2A
PK_Tyr_Ser-Thr
WDR90_beta-prop_4th
WD40_RFWD3
Motif
Other DBs
NCBI-GeneID:
126625952
NCBI-ProteinID:
XP_050151033
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All DBs
Position
6:complement(22884956..22897518)
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AA seq
1045 aa
AA seq
DB search
MEDAVAEEVNPLDPAEVAQLQGKENDYSLKSETGNPLECQEMRIPVDGDYPLSSQHEILE
KVDMASYVNKLEHPYGGLGFMNDVGFMEEELTLRNYNSSNLAMLDTSNNQGRMQSRQNPQ
QHLFQLASGSGSGSSQVKTAVKDNGKAISGGLENEGATSFPGFWNKRELSDNHYDVVEEL
TNIENTGASANTYAGIRTKILSRPGFSEFFVKNTLKGKGVILKGPNHENGHIESRNLNSL
KVAGDSLAASNPTMSMNANVVTSSSNGVNVGLRGGGSNHDENSLREWLNIGRPKANKVEC
LYIFRQIVDLVDNFHSKGVSLPGLRPSFFKLLPSNQVKYVCLPVRNEMLESMRDRDTSLL
ENSSIKKKQKISQNTRLHWPQFSSTAYFMHDNVNTSHINIARLQNRSDAFDEHNPRTRHE
IRTISSNPHMDYAAQRFTPISELLEEKWYISPEELSEGCCTIFSNIYSLGVLLFELLAHF
DSNSTLAAAMSNLRHRILPPNFLSENGKEVGFIMWLLHPEPSSRPTTRQILQSEVVNRLQ
EVSVKELSSSVEQEGAELDLLLHFLTSLKEQKQNHAANLLETIGIIEADVEEVERRHSLR
KPLIDRGLYDESISGSKYMFVSKEDSRSEVLSPLFPVPSSNESRLMKNIDQFESAYFSMR
SRIQIPETDSRIRRDKDLLRTRNNWYVGTKDEDKETCTDRLGAIFDGLCKYSRYSKFEVR
GILRNGDFSSSSKVISSMSFDRDEDYFATAGVSMKIKIFEFNAFFNNSVDIHYPVIEMSN
KSRITCVCWNNYIKNYLASSDYDGVIKLWDASTGQEFAQYTEHVTRAWSVDFSQVYPTKL
ASGSDDGSVKLWSINEKNCLDTIKHAANVCCVQFSAHSSHLLAFGSADYHTYCYDLRNTK
IPWCVLDGHKKAVSFVKFLDSETLVSASTDSTLKLWDLNRTSTSDPSTDACSLTLGGHTN
EKNFVGLSVSDGYIACGSETNEVYAYYRSLPMPITSHKFGSIDPISGKETDDYSAQWVSS
VCWRGKSDMVVAANSDGCIKVLEIV
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgcagtggctgaggaagtgaacccattagatccagcagaggttgcacaactc
caagggaaagagaatgactactcactaaaatctgaaaccggcaacccattggaatgccaa
gagatgcgtataccagttgacggtgattatcccttaagctcgcaacatgagattttagag
aaagtagatatggctagctatgttaacaaattagaacacccatatggtggcctaggcttt
atgaatgatgttggtttcatggaggaagagctaactctgaggaattacaatagttcaaac
ctagccatgcttgatacatcaaacaatcaaggaagaatgcaatctaggcagaacccgcaa
caacatttatttcagctagcaagtggatcaggaagtgggagttcacaagtcaaaactgca
gtcaaggataatgggaaggcaatttccggtggcttggagaatgagggggccacatctttc
cctggtttttggaataaaagggaattaagtgacaatcactatgacgttgtggaagaattg
acaaacattgaaaatacgggggcttcagccaacacttatgcaggtattcggacaaaaatc
ctatctaggccaggattttctgagttttttgttaaaaatacactgaagggtaagggtgtc
atattgaagggtccgaatcatgagaatggtcacattgaatctagaaacctgaatagtttg
aaggtggccggtgattctttggcagcttctaatccaacaatgagtatgaatgcaaatgtc
gttacgtcttcttccaatggtgtgaatgtcgggcttaggggtggtggctctaatcatgat
gaaaacagtttgagagaatggctgaatattggacgtcctaaagcgaataaagttgaatgc
ttgtatatatttagacaaatagtggatctggtggataattttcattctaaaggagtttct
ttgcctggattgcgaccttctttcttcaagttgttaccttcaaatcaggttaagtatgtt
tgcttaccagtccggaacgagatgcttgagagtatgagggatagagatacatccctttta
gaaaatagttcaatcaagaaaaagcaaaagataagtcagaacactagattgcactggccc
cagttctctagcactgcctacttcatgcatgataatgtgaataccagccacatcaacatc
gctcgtttgcagaacagaagtgatgcatttgatgaacataatccaagaacaaggcatgag
atacgtaccatatccagcaatcctcatatggattatgcagctcagcggtttactccaata
agcgagctattggaagagaagtggtatattagtcctgaggaactcagtgaaggatgttgc
acaattttttcaaatatctacagtctgggtgttcttctttttgagttacttgctcatttt
gactcaaatagcacccttgctgccgcaatgtccaatctgcgccacagaattcttccccca
aatttcctgtcagaaaatggtaaggaggttggatttattatgtggcttcttcatcctgaa
ccatcttcacgcccaacgacaaggcaaattctacaatctgaagtagttaacaggttacag
gaggtttctgtaaaagaattgtcatcttctgtggaacaagagggtgcagaattggattta
ttattgcatttccttacttctttgaaagaacagaagcagaaccatgccgcaaatttgttg
gaaaccattgggatcatagaagcagatgttgaagaagtggagaggaggcactctctaaga
aaacccttgattgatcgtggcttgtacgatgaatccatcagtggaagtaaatatatgttc
gtgagcaaagaagattcaaggtcagaggtgctttctccattatttcctgttcctagttca
aatgagtcgaggttgatgaaaaacatagatcagtttgagagtgcttacttctcgatgaga
tcaagaattcagattcctgagactgattctagaatacgcagagataaagatttattaaga
actcgcaataattggtatgtgggaacaaaggatgaagacaaggagacatgcactgatcga
ctgggagccatctttgatggtttgtgtaaatattcgcggtatagtaagtttgaagtacgt
ggcatactaagaaatggagatttcagcagttcctctaaagtaatttcttctatgagtttt
gatcgggatgaagactattttgctactgctggggtttcaatgaaaattaagatttttgag
tttaatgctttcttcaacaattctgttgatattcattatccggtgattgagatgtcaaac
aaatcaaggatcacatgtgtttgctggaacaactacataaaaaactatctggcttcatct
gattatgatggtgtaatcaagttatgggatgccagcactggtcaagagtttgctcaatac
actgagcatgtaacgagggcttggtctgtagacttttctcaagtatatccaacaaaatta
gccagtggaagtgatgatggttctgtaaaattgtggagcatcaacgagaaaaactgttta
gataccatcaagcacgctgcaaatgtatgctgtgtacagttctctgctcactcctctcat
ttgctggcctttgggagtgcggactaccacacctactgctatgatcttcgtaatactaaa
attccatggtgcgtactggatgggcataagaaagctgtaagctttgtgaaatttttggac
tcggagacccttgtttctgcatccactgacagtacattaaagctatgggatcttaacaga
accagtacgagtgatccgtccaccgatgcttgcagcctaacccttggtgggcatactaat
gagaagaactttgtcgggttatccgtttcagatggttacatagcatgtggttcagaaacg
aatgaggtttatgcttactatagatctctgcctatgccgatcacttcacacaagtttggc
tccattgatcctatttctggaaaggagactgatgattatagtgcacaatgggtttcgagt
gtctgctggagagggaaatcagatatggttgtcgctgccaattcggacgggtgtataaaa
gtgttggagattgtttaa
DBGET
integrated database retrieval system
