Malus sylvestris (European crab apple): 126625959
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Entry
126625959 CDS
T09027
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE-like
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
126625959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msyl03009
]
126625959
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
126625959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Utp13
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_SPT8
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_NWD2_C
WD_LRWD1
PEP5_VPS11_N
Beta-prop_Vps41
Nbas_N
Cytochrom_D1
WD40_like
SieB
Motif
Other DBs
NCBI-GeneID:
126625959
NCBI-ProteinID:
XP_050151045
LinkDB
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Position
1:29878160..29884311
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AA seq
873 aa
AA seq
DB search
MASLPLKKNYRCVPSLQQFYSGGPFAVSSDGSSIACKCGESIKIVDSLDASIRSTIEGDL
DEVTALALSPDDTLLFSAGHSRQIRIWDLSTLKCVRSWKGHEGPVMGMACHPSGGLLATA
GADRKVLVWDVDGSFCTHYFKGHKGVVSSVLFHPDPTKQLLFSASDDTTVLVWDLLTKKC
VATLSGHNSTVTSMALSEDGWTLLTAGRDKVVILWDLHDYSCMKTVTTYEVLEAVCAIYS
GTPLSSYLGSCKKQNGKKSGLSETCFITVGDRGIVRIWNSEGSVCLYEQKSSDVTPSSDV
DESNRGFTAAVMLPSDKGLLCVTADQEFLLYSPVKLPEGTLEFELSKRLVGYNDEIVDMK
FVGDDEQFLAVATNLEQVRVYDIASMSCSYVLAGHTGIVLCLDTCVLSCGKPLIVTGSKD
NTVRLWDSESKCCLGLGIGHMGGIGAIAFSKKQKDFFVSGSSDRTIKVWSLDGLSDNTEK
PVNLKAKAGVAAHDRDINSVAVAPNDSLVCSGSQDRTACVWRLPDLVPVIVLKGHKRGVW
SVEFSPVDQCVITASGDKTIKIWAISDGSCLKTFEGHTSSVLRASFLTRGTQFISSGADG
LVKLWMVKTDECIATYDQHDNKVYALAVGKKTEMLATGSSDAVINMWYDCTASDKEEAFR
REEEGVLKNQELENAVLDADFSKAIQVAFELRRPHKLYKCFSEIWRKRETEKQMEKALLA
LGEEEIKLLFEYVREWNTKPKLCHVAHFVLSKVFNILSPTKINEIKGIGEIFEGLLSYSQ
RHFSRMDRHETNTYLVNYTLTGMSVIEPETDTRVLHDKSLMHSSADDEKGTLINEPEDEE
RKTSQRLKEEAATKKRKSKKSKDGSTCNKKVKA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctctacctttgaagaagaattaccggtgcgtgccctctctgcaacagttctac
tccggcggccccttcgccgtctcatccgacggctcctccatcgcctgcaaatgcggtgag
tccattaagatcgtggattcattggacgcctcgattcggtccactattgaaggcgactta
gacgaagttaccgctttggccctcagccccgacgacactctgctcttctccgccggtcac
agtcgccaaattaggatttgggacctctccaccctcaagtgcgtgcgttcttggaagggt
catgaggggccagtgatgggaatggcttgtcacccgtctggaggattgcttgcgactgcc
ggagctgataggaaggttcttgtttgggatgttgatggcagcttttgcactcattacttt
aaaggccacaaaggggttgtttctagtgttctcttccatcctgatcctactaaacaactt
cttttctccgcaagcgatgatacaactgtgcttgtttgggacttgttaaccaagaagtgc
gttgcaacgcttagtgggcataactccacagtaacttctatggcactctctgaagacgga
tggacattgctcacagctggaagagataaggttgtaattttgtgggacctccatgactat
agctgcatgaagactgtaacaacatatgaggttcttgaagctgtgtgcgcaatctattct
ggaactccattgtcatcctatttgggttcctgcaagaagcagaatgggaagaaaagtgga
ttaagtgaaacttgttttataacagttggtgaccgtgggattgtaaggatttggaattct
gaaggttcagtttgcctatatgagcaaaagtcctcagatgtcactccatcttcagatgtg
gatgaatcaaataggggattcaccgcagccgtcatgcttccttcagataaagggttgctt
tgtgtgactgctgatcaggagttccttttatattccccggttaagttgccagaggggacg
ttggaatttgaattgagcaaaagacttgtaggttacaacgatgagattgtggatatgaag
tttgtaggagatgacgaacaattccttgctgttgccacaaatcttgaacaggtacgagta
tatgacattgcgtctatgtcatgttcttatgtattggcaggtcatactggaattgttcta
tgccttgacacctgtgtattgagttgtggaaaaccacttattgtgactgggagcaaagac
aacactgttcggttgtgggattcagaaagcaaatgttgccttggtcttggcataggtcac
atgggaggtattggagctattgctttctcaaaaaagcagaaagacttcttcgttagtggc
agtagtgatcgtaccatcaaggtgtggagtttggatggtctttcagacaatacagaaaag
ccagtgaatctgaaagcaaaggctggtgtagcagcccacgatagggatatcaattcagta
gctgttgcaccaaatgatagtttagtttgtagtggttcacaggatcgcactgcttgtgta
tggaggcttccggatcttgtaccagtaattgtacttaagggtcataaaaggggggtttgg
tctgtagagttctctcccgttgatcaatgtgttataacagcttctggtgataaaacaata
aagatatgggccatatctgatggttcgtgcttgaaaacatttgaagggcatacatcaagc
gtattaagagcatcgtttcttactcgtggaacccaatttatttcttcaggtgctgacggg
ttggtaaaactgtggatggtcaaaaccgatgaatgcattgctacttatgatcagcatgac
aacaaggtttatgccttggctgttggaaaaaagacagaaatgcttgcaactggcagcagc
gatgctgtcatcaatatgtggtatgattgtactgcttctgataaagaggaagcttttcgt
agagaggaggaaggtgttttaaagaatcaagagctagaaaatgctgtgttagatgccgac
ttttctaaagcaatccaagttgcatttgagcttcgcaggcctcataagctttataagtgc
ttttctgaaatttggaggaagagagagactgaaaagcagatggagaaagcccttcttgcc
cttggcgaggaagagatcaagctactatttgaatatgttcgggaatggaatacaaagcca
aagctctgtcatgttgctcactttgtgctttcaaaagttttcaacatcctcagtccaaca
aagattaatgagataaagggcattggggaaatctttgaaggtctcctctcctattctcag
aggcattttagccgaatggacaggcacgaaacgaacacgtatttggtgaactacactctg
actggaatgtcagtcattgaaccagagacagatacacgagtattgcatgacaagtctttg
atgcactcctctgcggacgatgagaaagggactttaataaacgaacctgaagatgaggag
cgaaaaacctctcaacgtttgaaagaagaggcagctacgaagaaacggaagtccaagaaa
tcaaaagatggttccacttgcaataagaaagttaaggcatag
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