Malus sylvestris (European crab apple): 126626006
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Entry
126626006 CDS
T09027
Name
(RefSeq) NF-X1-type zinc finger protein NFXL1-like isoform X1
KO
K12236
transcriptional repressor NF-X1
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msyl03000
]
126626006
04121 Ubiquitin system [BR:
msyl04121
]
126626006
Transcription factors [BR:
msyl03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
126626006
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
NFX1 proteins
126626006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_NFXL1
zf-NF-X1
R3H
NCBP3
RNA_bind
Motif
Other DBs
NCBI-GeneID:
126626006
NCBI-ProteinID:
XP_050151121
LinkDB
All DBs
Position
6:34121092..34132836
Genome browser
AA seq
1146 aa
AA seq
DB search
MSFRVQNERRDRSRFPAQPATQPTQPARREWVLRGTDPTTTTAAVNPPPRVYPNNPNVNA
NQPNPRFNPNNPNGNVSQPNPRFNPSNLNGNAGLPNHSSVPPSEIRPHRGGNNGVIKGHM
GQSVNHRRERGRSENQEEKGLKDSNLPQLVQEIQDKLTRGTVECMICYEMVRRSAPVWSC
SSCYSIFHLNCIKKWARAPTSIDMSAEKNQGFNWRCPGCQSVQLTSSKEIRYVCFCGKRT
DPPSDLYLTPHSCGEPCGKQLEREVPGNGVSKEDLCPHICVLQCHPGPCPPCKAFAPPRL
CPCGKKTITTRCSDRASVLTCGQDCNKLLDCWRHRCERTCHVGPCDPCQVLVDASCFCKK
KVEVVLCGDMTVKGEVKAEDGVFSCSSTCGKMLSCGNHSCSEVCHPGPCGDCNLMPTRIK
TCHCGKTSLQEERRSCLDPIPTCSQLCSKSLPCEMHQCQEVCHTGDCPPCLVEVTQKCRC
GSTSRTAECFKTTMENEKFTCDKPCGRKKNCGRHRCSERCCPLSNLNNALLGNWDPHFCS
MSCGKKLRCGQHSCESLCHSGHCPPCLDTIFTDLTCACGRTSIPPPLPCGTPPPSCQLPC
SVPQPCGHTSSHSCHFGDCPPCAVPVAKECIGGHVVLRNIPCGSRDIKCNKLCGKTRQCG
MHACGRTCHPPPCDTSCLAEQGSKTSCGQICGAPRRDCRHTCTSLCHPYASCPDSSCDFP
VTITCSCGRMTASVPCDSGGSNASFKADTVYEASIVQRLPAPLQPIESTSKNIPLGQRKL
MCDDECAKMERKRVLADAFDITPPNLDALHFGESSAVSELLSDLLRRDPKWVLSVEERCK
YLVLGKSRGATSGLKVHVFCPMLKEKRDVVRMIAERWKLAVQAAGWEPKRFIVVHVTPKS
KAPARILGVKGTTTVSAPKPPSYDHLVDMDPRLVVSFPDLPRDADISALVLRFGGECELV
WLNDKNALAVFNDPARAATAMRRLDNGALYHGAIVVHSNGSASMAASGSNAWGGLGTSRE
GGASAVLMGNPWKKTVTRESGWREDSWGEEEWPGSSTDAPANVWNKKAPIAASVNRWSVL
DGDTALGSSASSLRVEDYRKLSLGPLNSALDSKASGSSSSSTFEGQPVGVIAETPEVVDD
WEKAYE
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgagttttcgtgtccaaaatgagcgaagggataggtccaggtttcctgctcagcctgct
actcagcctactcagcctgctcgtcgagagtgggtgctgagaggtaccgaccctaccact
accactgctgctgttaacccgccaccaagagtctacccgaacaacccgaatgtcaatgcc
aaccagcctaatccaagattcaatccaaacaacccgaacggcaatgttagccagcctaat
ccaagatttaatccaagcaacctgaatgggaatgctggcctgcctaatcatagctctgtt
ccaccatcagagattcggccacacagaggaggaaataatggcgttattaaaggccatatg
ggccagtcagtgaaccatagaagggagaggggaaggagtgagaatcaggaggaaaaggga
ttgaaggactcgaatttgccccagcttgtgcaagaaattcaggataagctgacaaggggc
actgtcgagtgcatgatttgttatgaaatggtgaggaggtctgcacctgtttggtcctgc
tcaagctgttactcaattttccatctgaattgcatcaagaaatgggctcgagctcccact
tctattgacatgtctgcggagaagaatcaggggtttaattggcggtgtcctggatgtcag
tctgtccagctcacatcttcaaaggagattcgatatgtttgcttttgtggcaagaggaca
gacccgccttcagatttgtatttgacaccgcattcgtgtggtgagccttgcgggaagcaa
ctcgagagggaggtcccaggcaatggtgtgagtaaggaggatctttgccctcacatttgt
gtcttgcagtgccacccaggtccatgccctccgtgtaaagcatttgccccaccacgttta
tgcccttgtggaaagaaaacaatcacaacgagatgttctgaccgggcatctgttctgact
tgtggtcaggattgtaataagctgcttgattgttggcgtcatcgctgcgagcggacttgc
catgtgggtccttgtgatccttgtcaggttctggttgatgcttcctgcttttgcaagaaa
aaggtggaggttgttctctgtggagacatgactgttaagggagaggtgaaagcagaagat
ggtgttttttcatgtagttccacctgtggaaaaatgcttagctgcggtaatcattcctgc
agtgaggtttgccatccagggccgtgcggagattgcaatttaatgccaactaggattaag
acatgccactgtgggaagacaagcttgcaagaggaacgacggagttgtttggatccgatt
ccaacctgttctcaattatgtagcaagtccctcccttgtgagatgcaccagtgtcaagag
gtgtgccatactggggattgcccaccttgtttggttgaagtgacccaaaaatgtcgttgt
gggtcaacttctcggactgcggaatgctttaaaaccacaatggagaatgagaaattcact
tgtgataagccttgtgggcggaagaagaattgtggaaggcacaggtgcagcgagaggtgc
tgtcctctttctaatttgaataatgctctcttggggaattgggatcctcacttttgctct
atgtcctgtgggaagaagttaaggtgcggtcagcattcttgcgaatcgctttgtcacagc
ggccactgccctccctgccttgatacaatcttcacggacttgacctgtgcatgtgggagg
acttcaatccctcctccactgccatgcggtacccctcccccatcatgtcagctcccgtgt
tcagtccctcagccttgtgggcatacatcctctcacagctgccactttggagactgtcca
ccatgtgcggtgcctgtggcaaaggagtgcattggtgggcatgtggtcctcaggaacatt
ccttgtgggtcgagggacatcaaatgtaacaagctctgtgggaagacaaggcagtgtggt
atgcatgcttgtggcaggacttgtcacccgcctccctgtgatacatcttgtttggcagaa
caaggttcaaaaacttcttgtggacagatatgtggtgctcctaggagagattgcaggcat
acatgtacttcactttgtcacccttatgcttcttgtcctgatagcagctgtgattttcct
gtcacaatcacttgttcttgtggccggatgacagctagtgttccttgtgattccggtgga
agcaatgctagtttcaaggccgatactgtttatgaagcttccattgttcaaaggttgcca
gcaccactgcaaccaattgaatcaaccagcaagaatatcccgctcggacagaggaagctt
atgtgtgatgatgaatgtgctaagatggagcggaaacgggttcttgcagatgcttttgat
ataactcctccaaacttggatgcgctccattttggtgagagttctgctgtttctgagttg
ctttcagaccttcttagacgcgatcccaagtgggtattatctgtggaggagagatgcaag
tacttggtgctcggcaagagtagaggtgctacaagtggtctcaaggttcatgttttctgc
ccgatgctgaaggagaagagggatgtagttcggatgatcgctgaaagatggaagcttgca
gttcaagccgctggctgggagcccaagcgatttattgtggttcatgttacacctaaatcc
aaagcccccgctcggatacttggggttaagggcacaacaacagtgagtgcacccaagcct
ccgtcttatgatcatttagtggacatggatcccaggcttgtagtttcattcccagatctc
cctagagatgcagatataagtgcacttgtattgaggtttggtggggagtgtgagttagtc
tggttgaacgataagaatgcactagccgtattcaacgaccctgctcgagcagcaactgca
atgaggaggttggataatggtgcactatatcatggcgctattgttgttcactccaatggc
agtgcatctatggcggcatcaggttctaatgcttggggtggattggggacatctagggaa
ggaggagcttctgcagtgctgatgggtaatccgtggaagaagactgttacacgagagtcc
ggttggagggaagattcatggggcgaggaagagtggcctggcagttctacagatgcgccg
gcaaacgtgtggaataaaaaagcaccaattgctgcctcagtaaatcgatggagtgtactg
gacggtgacacggcattgggctcatccgcttcatctctcagagttgaggactatagaaaa
ctgtctttgggtccattgaattcggccttggactcgaaagcgagtggttcgagttcgagt
tccacttttgaagggcagcctgttggagttattgcagaaacacctgaagtggttgatgac
tgggagaaggcttatgaataa
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