Malus sylvestris (European crab apple): 126626059
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Entry
126626059 CDS
T09027
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126626059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126626059
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126626059
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126626059
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
126626059
NCBI-ProteinID:
XP_050151204
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Position
6:34697376..34710098
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AA seq
897 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWINNVVGELESQIDSFEAEIEGLSFKKGKGRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSEVDELYNTLPLDKVES
LEDLAIIPPGLIKGAPMLGLKTNLAPPASPLPPAATSTNQQSVSVQEPVEDAVSQDSNAD
NIPRTPPPRSGVLSSSPASTPTGSHATPVSASVPTHNLPSVPSVLAIPGSNAVRGVTENA
GAANSSSPVSLSASVKEEESASFPGRRPSPSLSDAGLVRGISRGGFSAPIPSSIPVSSSN
VSPSNSALGAVPSVSDVTKRNILGADERIGNSGVVQPLVSPITNRLILPQAAKASDGSAP
VDSSNASEAAIPGRAFSPSIVSGMQWRPGSSFQNQNEAGIFRGRTEIAPDQREKFLQRLQ
QVQQQGHSTILGMPPLAGGNHKQFSAQQNPLLQQFNPQNSSVSSQAGPGLGVQPPGLGTV
APTTLQQQLNSIHQQSNQQALMSVGPKETDVSHPKVEEQQQQQNIPDESTADSTSSGLVK
NLMNEDDLKASYAVDSLAGVSGSSTEPAQVPRDIDLSPGQPLQSNQPSPSLGIIGRRSVS
DLGAIGDNLSGSTANSGVLHDQSYNSQMLEAAYYKLPQPKDSERASSYTPRHPAKTPLSY
PQAQAPIVNNPAFWERLGLEPYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNT
WFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgagtcggaagctccagggcgagatcgaccgcgttctcaagaaggtccaagaa
ggcgtcgacgtcttcgatagcatttggaacaaggtttacgatacggacaatgcgaaccag
aaagagaagtttgaggccgacctcaagaaggagataaagaagctccagaggtacagggac
cagatcaagacttggattcaatccagtgaaatcaaggataaaaaggtcagtgcctcttat
gagcaggctctggtggatgctcgcaaactcattgagcgcgaaatggaaaggttcaagata
tgtgaaaaggagacaaaaacaaaagcattttccaaagaaggattgggccaacaacctaaa
accgatccgagggagaaggccaaatcagagacaagggattggataaacaacgtggttggg
gagttggaatcacagattgacagctttgaagctgagattgaagggctatcttttaagaaa
gggaagggcagaccacccagactgacccatctagagacatcaattactcggcataaggct
catataatgaagttagaactgatcttgaggctattggataatgatgagctgagtcctgag
caggtcaatgatgttaaagactttttggaagactatgtggaacgcaatcaggaggatttt
gatgaatttagtgaagttgatgagctttacaacaccttaccattggacaaggtggagtcc
cttgaagatctggccattattcctcctggtcttatcaagggtgcaccgatgcttggcttg
aagactaatttggcaccacccgcatctccactgcctcccgctgctacttctactaatcag
cagagtgtttctgtccaagagccagttgaagatgcagtttcccaggacagtaatgctgat
aacattcctagaactccacctcctagaagtggtgtgctttcatcttctcctgcatcaaca
ccaactgggagtcatgcaactcctgtctctgccagtgttccaactcataatctgcccagt
gtgccaagtgttttggccattccaggttcaaatgctgttcggggtgtcacagagaatgca
ggggctgctaattcttcatctcctgtaagtttgtctgcttctgtgaaggaagaagagtca
gcaagcttccctggccgtagaccatcaccatctctttctgatgctggacttgtaaggggc
atcagtcgaggtggcttctctgccccaattccatctagtatccctgttagctctagcaat
gtgtctcctagtaatagtgcccttggtgcagttccttcagtttctgatgtaaccaagaga
aatatattgggagctgatgagagaattgggaatagtggtgtggtgcagccacttgtttcc
cctataactaacagactgatcttgcctcaagctgccaaggctagtgatggaagtgctcca
gttgattctagtaatgctagtgaggctgctatacctggcagagcattttctccttctatt
gtttctggcatgcagtggaggcctggaagttcctttcaaaaccaaaatgaagcagggata
tttcgtggaaggactgaaatagcacccgatcagagggagaaatttttgcagcggctccaa
caagtgcagcaacaaggtcacagtaccattcttggcatgcctcctcttgctggtggaaat
cataagcaattttctgcacagcaaaacccacttttgcaacagtttaatcctcaaaactca
tctgtatcttctcaagctggccctggactaggggtacagcccccaggtcttggtactgtt
gcacctaccaccttacagcagcagctaaattctatccatcaacagtctaaccaacaggca
ttgatgtcggttggaccaaaagaaactgatgtaagtcatccaaaagttgaggaacaacag
caacaacagaatatacctgatgagtctactgcggactctactagttctggactcgtaaag
aatctaatgaatgaagatgacttgaaagcctcatatgcagttgattctctggctggagtt
tctggctcttcaacagagcctgctcaagtaccacgagatattgatctctctcctgggcaa
cctttacagtccaatcaaccttctcctagccttggcattattggccgaagaagtgtttct
gatcttggtgcaattggtgataacctttctggatcaactgctaattctggggtattgcat
gatcagtcgtataattcgcagatgcttgaggctgcttactacaaacttccacaacccaaa
gactcagaacgtgcaagcagctatactccaaggcaccctgcaaaaacacctctaagctac
ccccaagcgcaagcacctattgttaataatcctgccttctgggaacggttaggtcttgaa
ccatatggcactgataccctgttctttgcattttactatcagcagaacacttatcagcaa
tatttggcggcaaaagaactgaagaagcaatcttggagataccataggaaatataacact
tggtttcaacggcacgaggagccaaaagttgccacagatgaatatgaacaggggacgtat
gtgtactttgactttcatattgcaaatgatgatctacaacacggatggtgccaaaggatc
aaaactgagttcacttttgaatataactatcttgaggatgagcttatcgtatag
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