Malus sylvestris (European crab apple): 126626597
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Entry
126626597 CDS
T09027
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03013
Nucleocytoplasmic transport
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126626597
03015 mRNA surveillance pathway
126626597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126626597
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126626597
5.6.2.5 RNA 5'-3' helicase
126626597
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126626597
mRNA cycle factors
Common to processing body (P body) and stress granule
126626597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
NPHP3_N
nSTAND3
PhoH
ATPase
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
126626597
NCBI-ProteinID:
XP_050151924
LinkDB
All DBs
Position
6:5580770..5593553
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AA seq
1285 aa
AA seq
DB search
MDSEPNNLFDTASQPDTSNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLSEPA
DRDRGGGGVGSDHQSDASPVSAAPGSATKARAGGSGSNAGNNQVVDGLTAGMSVLNFEDT
GDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMN
WDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKSNPDASLEDLEKP
GVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIA
YFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVD
VNHGFSVDFVWKSTSFDRMQGAMKAFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFG
APGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELYKLQQLKD
EQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQST
EPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQY
RMHPALSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNSLLTHYKEHECLVEGPLNNLKQSMVQFPKPKKIYNDRRLFFGGGPGVIPNDSFGSV
ASAGQNVDRRSNRGRGSYLPPGPPNGTHKPGVHPAGYPMPRAPLSPFHGGPLSQPYAIPT
RGAVHGPVGAVPHVPQPGSRGFGAGRGNAGAPIGSHLPHQQGTQQNVGNMGSTFNFPTLE
NPNSQPSVGGPLSQPGFVNNMPVQGPSQTFRDGFSMAGMSQEFLGDDFKSQGSHVPYNVA
DFSTQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGYSRFGTGNDFMSQDYMPHGSQGLF
TQVGFNDPSQDEASQSHYGVANANQLQSQGFMNSLYSQPFAHYNTQPMNLQAPPQQQQQQ
QQQPQPQPQPQQGQTSQNQKIHYNG
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggattccgagcccaacaacctctttgacacggcgtcgcagcccgacacctccaacgac
gcctacaccttcctcgaattcaacacccagggcgaggactttgactacccggagttccgc
gacccgattcgctctcctgtcgcctggcccactccttcagattccttatcggaacctgca
gaccgtgaccgtggcggtggtggggtcgggtcggaccaccagtccgatgcgtcgccggtt
tctgctgccccgggcagcgccacaaaggctagggcaggtgggtcgggcagtaacgccggc
aataatcaggtggttgacggcctaacggctgggatgagtgtgcttaactttgaggatact
ggggatgacgacaattacgagtttggaaaaggggatttcacagaacatgcgtgccggtac
tgcggcgtgtcgaacccggcttgcgttgtgaggtgtaatgtgccttcgtgtcgaaaatgg
ttctgtaattcaagggggaacacgtccggctctcatattgtgaatcacctggtccgagca
aaacacaaggaagtctgtcttcataaagatagcccattgggagaaacaatccttgaatgc
tacaactgtggatgtcgtaatgtattccttcttggatttatttcagccaagacagagagt
gttgttgttcttctttgtagggaaccctgcttaagtgttaatgcattgaaggatatgaac
tgggatctgagccagtggtgtcccctgatagatgataggtgtttcttgcagtggcttgtt
aaggtcccgtctgaacaggagcagctaagggcacgccaaatcagtgctcaacaaattaat
aaagtagaagaactttggaagtccaatcctgatgcttcccttgaagatcttgagaaacct
ggtgtggatgatgaaccccaacctgtggccttgaagtatgaagatgcttaccagtatcaa
aatgtgtttgcaccacttattaaacttgaagctgactatgataaaatgatgaaagaatct
caaagcaaagacaatgtcacaattcggtgggatattggtcttaacaagaagcgtattgct
tattttgtgtttccaaaggaagacaatgagttacgtcttgtacctggtgatgagttgcgg
cttcgttattctggagatgcagctcatccagcatggcagtcagtgggacatgttatcaag
ttaactgcacaagaggaggttgcacttgaacttcgtgccagtcagggagttccagttgat
gtgaaccatggcttcagtgttgactttgtctggaagagtacaagttttgatcggatgcag
ggggccatgaaagcttttgcagtggacgagacaagtgttagtggatatatttaccatcat
ttgttaggccatgaagtagaggttcaaatggtccgtaatacattgccccgtcgttttggt
gcacctggtcttccggagctcaatgcatctcaagtttttgctgtaaagagtgtccttcag
aagcctataagtttgatccagggtccacctggcacaggaaaaactgtgacttctgcagca
attgtgtatcacatggctaaacaaggccagggacaggttttggtctgtgctcctagtaat
gttgctgtagaccaactagctgagaagataagtgcaactgggttgaaggttgttagactt
tgtgcaaaatcaagggaagctgttagttctcctgttgagcatttaacccttcattaccag
gttcgtcatcttgacacgtcagaaaagagtgaactgtacaagctacaacaattgaaggat
gagcaaggagaattgtctagtagcgatgagaaaaaatataaggcactgaagcgggcaacc
gagagggagatttctcaaagtgctgatgtcatttgttgcacatgtgttggtgctggagat
ccacgattggccaattttaggttccgtcaggtacttattgatgagtctactcagtctacg
gagcctgaatgcctgattcctttggttcttggggcaaagcaggttgttcttgttggagat
cactgccagcttggtccagtcattatgtgcaagaaagcagctcgtgctgggcttgcccag
tctctctttgaacgcctcgttttacttggtgtgaaaccaattagattgcaggttcaatac
cgaatgcatccagccttgtcagaatttccatctaatagcttctatgagggcacgcttcaa
aatggagtgaccatcaatgaaaggcaatcatcaggcattgattttccttggccggttccc
aatcgtcccatgttcttttatgtacagatgggccaagaggagataagtgctagtggaaca
tcctatctgaacagaactgaggctgctaatgttgaaaagattgtcacaacattcttgagg
agtggtgtagtccctagtcagattggagtgatcacaccatatgagggacagagagcttat
attgtgaactatatgtcgcgaaatggtgctctcagacagcaactttataaggaaattgag
gttgcaagcgtagattcatttcagggaagggaaaaggattatatcatcctttcgtgtgtg
aggagtaatgagcatcagggcatcggattccttaatgatcctcgcaggctcaatgttgct
ctaacacgtgctcgatatggtattgtcattcttggaaaccctaaagttcttagtaaacag
ccactgtggaatagcttgttgacacattacaaggaacacgagtgcttggttgaggggcct
ctaaataacctgaagcagagtatggtgcaatttccaaagcctaaaaagatctacaatgat
cggcgcctattctttggaggtggtcctggagttatccccaatgacagttttgggtctgta
gcctcagctggccaaaatgtggacagaagaagtaatcgtggtaggggttcttacctacct
cctggcccacccaatggtacccataagcctggtgtacatccggctggatatccaatgcct
cgggcacctctttcaccattccacggaggacccctttctcaaccgtatgctattccaact
cgtggagctgtgcatggaccagttggagctgttcctcatgtccctcaacctggaagtcgt
ggttttggggcaggacgtggaaatgctggtgctccaattggcagtcatcttccgcaccag
cagggcacacaacagaatgttgggaatatggggtctaccttcaactttcccactcttgaa
aatccaaatagccaaccatctgttggtggccccttatctcaacctggatttgtcaataat
atgccagttcaagggccaagccaaacatttcgtgatggattttccatggcgggcatgtct
caggaatttttgggtgacgactttaaaagtcagggatcacatgttccttataatgttgct
gacttctccactcaggcttctcaaagtggatatgctgttgattatgttactcaaggagca
caaggtgggtttccagggaactttctgaaccagaactctcaagctggatattctcgattt
ggtacagggaatgacttcatgtctcaggactacatgcctcatggatcacaaggcctattt
actcaggtgggctttaatgatccatcacaggatgaagcatcacagagccactatggagtt
gcaaatgccaatcaactccagtcccagggctttatgaactcgctgtactctcagcctttt
gcccattacaacacacagccaatgaacttacaggccccaccacaacagcagcagcagcag
cagcagcagccgcagcctcagcctcagcctcagcagggccagacctcccaaaatcagaaa
atccactacaatggttaa
DBGET
integrated database retrieval system
