Malus sylvestris (European crab apple): 126626676
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Entry
126626676 CDS
T09027
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126626676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126626676
03012 Translation factors [BR:
msyl03012
]
126626676
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126626676
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126626676
Translation factors [BR:
msyl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
126626676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_30
ATPase
AAA_16
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
126626676
NCBI-ProteinID:
XP_050152005
LinkDB
All DBs
Position
6:33601642..33609654
Genome browser
AA seq
1232 aa
AA seq
DB search
MPYSALFQCYIFRTTTMSLKHSTTSTTPVLVSLRGTHHHHRHRHHVALIRPSLLLRCSMM
NSRYHHSLCLAPARNWNACYYLPRYAGDVTCQASSRAAELDWKQRQQLRSSAVPFYQQNL
SYGRFAYQDASASEESDAELGSSQRQKGGSTLDNIDEWRWKLTMLLRNKDEQELVSREKK
DRRDFDHLSALASRMGLYSRQYSRVVVFSKVPQPNYRPDLDDKRPQREVVLPFGLHREVD
AHLKAYLSQKPMSQGNLSDFSLSRSNSNRSITNDGGHYEQQEPLIQNTDAMEKILQRKSL
QLHNRQRHWQESPEGQKMLELRKSLPAYKEKDALLKAVSENQVVVVSGETGCGKTTQLPQ
YILESEIEADRGASCSIICTQPRRISAMAVSERVAAERGESLGESVGYKVRLEWMKGRDT
RLLFCTTGILLRRLLVDRKLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM
SATLNAELFSSYFGRAPTIHIPGFTYPVRTHFLENILEMTGYRLNQYNQIDDYGHEKSWK
MQKQAQGLKKRKSQIASAVEDVLEAADFREYSPRTQESLSCWNPDSIGFNLIESLLLHIV
RKERPGAILVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMPSSEQKLIFDKPED
GVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAASRQRRGR
AGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSKALQPP
EPLSVQNAVEYLKIIGALDDYEDLTVLGRHLSVLPVEPKLGKMLILGSIFNCLDPVMTVV
AGLSMRDPFLMPHDRKDLAESAKAQFSAHDNSDHLALVRAYDGWRSAERTQSGYEYCWRN
FLSVQTLKAIDSLRKQFFFLLKDAGLADHNTESCNTWSHDEHLVRAVICAGLFPGICSVV
NKEKSIMLKTQEDGQVMLYSSSVNGSIPKIPYPWLVFNEKVKVNSVFLRDSTGISDSVLL
LFGGNISMGGLNGHLKMLGGYLEFFMNPTLADTYLCLKKELDELIHNKLLNPKLDMQSHT
NLLSALRLLVSEDQCEGRFVFGRKVPVPSMKATQEKLPNLKGTTKKVAENNNYKNHLQTL
LTRAGHDIPTYKTKPLKNNQFRSTVIFNGLNFVGKPCNSKKEAEKDAAAEAVLWLKGENH
SSSTDIDHMSMLLKKSRKTSQKRTSFDSAKWG
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgccgtactccgccctcttccagtgctatatattccgaaccaccaccatgtccctcaaa
cactccaccacttccaccacccccgttctcgtctctctacgcggaacccaccaccaccac
cgccaccgccaccacgtagctttgataaggccgtcgctgctactgcgatgctccatgatg
aacagccggtaccaccactcgctctgccttgctccggcccggaattggaatgcgtgctat
tatctgccccggtacgcgggggacgtcacgtgccaggcatcgtctcgggcggcggagctg
gattggaagcagaggcagcagctgaggagttcggcggtgccgttttaccagcagaattta
agctatgggcggtttgcgtaccaggacgcctccgcgagtgaggagtccgatgccgaattg
gggtcgtctcagcgccaaaagggtggttcgacccttgataacattgatgaatggagatgg
aagttaaccatgcttcttcgcaacaaagacgagcaagaattggtgtccagggaaaaaaag
gatagacgcgattttgatcatctttcagcactggcaagcaggatgggtttgtatagccgt
caatattctagagttgtagtatttagcaaagttcctcagcccaattacagacctgatctt
gatgataagcggccacaaagagaggttgtcttaccttttggacttcatagagaagtagat
gctcatctcaaagcctacctatctcaaaagccaatgagccaaggaaatttgtcagacttt
tccttgtcaagatcaaacagtaatagaagcattactaatgatggaggtcattatgagcag
caggagcccttgatacagaatacagatgccatggagaaaattcttcagcggaaaagcttg
caactgcataataggcaacgacattggcaggaatcgccagaaggtcaaaagatgcttgag
cttcgtaaaagtctgcctgcatataaggagaaagatgcactgttaaaagctgtatcagaa
aatcaggtcgtagttgtctccggcgaaacaggttgtggtaaaactacacaacttcctcag
tacattttagaatctgagattgaagctgatcgcggagcttcctgcagtattatttgtacc
cagcctagacggatatctgccatggctgtttctgaaagagtagctgcggaacgaggggag
agtctgggggaatctgttggttacaaagttaggcttgaatggatgaaagggcgggacacc
cggcttcttttttgcaccacaggcatattattaaggagattacttgttgacagaaagttg
agaggtgttacacacgtcattgttgacgagattcatgaacggggaatgaatgaagatttt
ctacttattgttctgaaagaacttctccctcgccggccagagttgaggttgattttgatg
agtgccaccctaaatgctgagcttttctcctcctactttggtcgtgctccaacgatccat
attcccgggtttacttacccagtccgaacacattttctggagaacattctagaaatgact
gggtatcggttaaatcaatataatcagattgatgattatggtcatgaaaagtcgtggaaa
atgcagaaacaagctcaaggtttaaaaaagaggaagagccaaattgcttctgccgtagag
gatgtacttgaagctgccgactttagggagtatagtccaaggactcaggagtctctgtcc
tgttggaatcctgactctattggttttaacctcattgagagtcttcttttacacatagtc
aggaaagaacggcctggcgcaattttagtttttatgacgggttgggatgacataaactcc
ttgaaggatcaactccaagctcatcccctattaggagatcctagcagggtcctactgctg
gcatgtcatggttccatgcctagctctgagcagaaattgatatttgataagccagaagat
ggtgttcggaaaatagttctagctacaaacatggctgagactagtatcactatcaatgat
gtagtttttgttgttgattgtggaaaggcgaaagagacatcatatgatgcactaaataac
actccctgtttgcttccttcctggatttcaaaggctgcttctcggcaaagaagaggcaga
gctggtcgtgttcaacctggcgagtgttaccatctctaccccagatgtgtatatgatgcc
tttgctgattatcagttgcctgaacttttgaggactccattgcaatcattatgtttacaa
atcaaaagtctacaacttggaagtatttcagagttcctatctaaggccttgcagccgccg
gaacctctgtcggttcaaaatgctgttgagtatttaaagatcattggggctttagatgat
tatgaggatctgacagtgttaggacgtcacctgtcagtgcttcccgttgagcctaaactt
ggaaaaatgctcatattggggtctattttcaactgtttggatccagtaatgactgttgtc
gcaggccttagtatgagagacccattccttatgccgcatgacaggaaggatcttgcagag
tccgcaaaagcacagttctctgctcatgataacagtgatcatcttgctcttgtccgagct
tatgatggttggagaagtgctgaaagaacacaatctggctatgagtactgctggagaaac
tttctttctgtacaaactctgaaagccattgactctcttcggaagcagttcttctttttg
ctcaaggatgcaggtctggctgaccataatacagaaagctgcaatacatggagccatgat
gagcatcttgtccgagcggtcatctgtgctggattatttcctggaatatgctctgtcgtg
aacaaagagaagtcgattatgcttaaaacacaggaagatggacaagtgatgctatactcg
agttctgtcaacggaagcatacccaaaattccatatccatggctagtcttcaacgaaaag
gtgaaagtgaattcggtttttctccgggattcaactggtatatctgattctgtgctcctt
ttgttcgggggcaacatttccatgggtggcctgaatgggcacttgaagatgttgggagga
tacttggagtttttcatgaatcccacattagcagatacatatctttgcttaaagaaggag
cttgatgaactgattcataataagctcctgaatcccaaattggatatgcaatcacataca
aacctcctatcggctctaagattactggtctcagaggatcaatgtgagggtagatttgta
tttggtcgcaaggtgccagtgccctcaatgaaggcaacacaagagaagttaccaaactta
aaaggcaccacgaagaaagttgcggagaacaataattacaaaaatcacctgcaaacattg
ctcaccagggccgggcatgatatacccacctacaaaacaaaaccattgaaaaacaaccag
ttccgttccacagtgatcttcaatgggttgaactttgtagggaagccttgcaatagtaag
aaagaagcagagaaagatgcagctgcagaagctgtactctggttgaagggagaaaaccat
tcttcgtccacagatattgaccatatgtcgatgcttcttaagaaaagtagaaagacaagc
cagaaaaggacctcatttgatagtgccaagtggggttaa
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