Malus sylvestris (European crab apple): 126626701
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Entry
126626701 CDS
T09027
Name
(RefSeq) DNA mismatch repair protein MSH2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
126626701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126626701
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
126626701
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
126626701
NCBI-ProteinID:
XP_050152044
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All DBs
Position
6:32809531..32814969
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AA seq
942 aa
AA seq
DB search
MDANFEDHSKLPELKLDAKQSQGFLSFFKTLPNDSRAIRLFDRRDYYTAHGENATFIAKT
YYRTTTALRQLGSGSNGLSSVSVSKNMFETITRDILLERTDHTLEIYEGSGSSWKLVKSG
TPGNLGSFEDVLFANNEMQDTPVVVALLPNFRENGCTVGLGYVDLTKRVLGLAEFIDDSH
FTNVESALVALGCKECLLPLESGKTSEIRTLHDALSRCGVMLTERKKTEFKMRDLVQDLG
RLVKGSIEPVRDFVSGFEFAPGALGALLSYAELLADESNYGNYSIQRYNLDSYMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINSRLDLVQAF
VEDPALRQDLRQHLKRISDIERLMHNLEKKRAGLQHIVKLYQSCIRLPYIKSALERYDGQ
FSSLTKERYWEPLELWTDDRHLNKFIALVEAAVDLDQLENGEHMISSSYDPALSALKEEQ
ESLEHQIQNLHKQTANDLDLALDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLE
TRKDGVKFTNTKLKKLGDQYQRIVEEYKSCQKELVNRVIQTTTTFSEVFWSVAGLLSELD
VLLSFADLASSCPTPYTRPVITPPDEGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDSASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALAHENVVEDTNMKQIVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIQVA
EFANFPESVVSLAREKAAELEDFSATTVTPNDATEEVGLKRKREHDAGDTSKGAARAHKF
LEEFSNLPLETMDLKQALQRVCKMKDELQKDAANSQWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggatgccaattttgaggaccacagcaagcttcccgagctcaagctagatgcaaagcaa
tctcaagggtttctctcattcttcaaaaccctccccaatgattcaagagctattcgattg
tttgatcgtcgggactactatactgctcatggtgaaaatgccactttcatcgcaaagacc
tactaccgtaccaccactgctttacggcagttgggtagcggatctaatggcctatccagt
gtgagtgttagtaaaaatatgtttgagacaattacgcgtgatatactactggaaagaaca
gaccatactcttgagatttacgagggtagtggatcaagttggaagctggtgaaaagtgga
acgcctggaaaccttggcagtttcgaagatgttttgtttgccaacaatgagatgcaggat
accccagtggttgttgcgctattacctaactttcgggaaaatggttgcacagttgggtta
ggatatgttgatctaactaaacgagtacttggattagctgaatttattgatgatagtcac
tttacaaatgtggaatcagctttagttgcacttggttgcaaggaatgccttctgccttta
gagagtggcaaaactagcgaaattagaacattgcatgatgcattgagtagatgtggtgtg
atgttaaccgagaggaagaagactgaatttaagatgagggatttggttcaggatctcggt
cggcttgtcaaaggctccattgaaccagttcgagattttgtgtcagggtttgagtttgca
cctggtgcattgggggcattgctctcttatgcagaattacttgctgacgagagcaattat
ggaaattatagcattcaaagatataatcttgatagctatatgaggttagattctgctgct
atgagggcactcaatgtcctggaaagcaaaactgatgcaaacaaaaatttcagtttgttt
ggtcttatgaataggacttgtactgctggaatgggtaaaagattactgcacatgtggcta
aaacagcctttattggatgtaaatgaaatcaactcgaggctagatttggtacaagcattt
gtggaggatcctgcacttcgccaagatttgaggcagcatctgaaaagaatttcagacatc
gagcggctgatgcacaatcttgagaagaaacgagctggtttgcagcatattgtgaaactt
tatcagtcgtgtataagacttccctacattaagagtgccctagaacgctatgatggacag
ttctcctcactgaccaaggaaaggtattgggaaccccttgagttatggactgatgatcgc
cacttaaataagttcattgctctggtggaagctgctgttgaccttgatcaacttgagaat
ggagagcacatgatatcatctagttatgacccagcactgtctgcactgaaggaagagcaa
gagtcgttggagcaccaaatacagaatttgcacaaacaaactgccaatgatctcgatctc
gccttagataaggctttaaaattagataaaggtacacaatttggacatgttttcagaatc
acaaagaaggaagagccaaaaatacggaagaagctcacaacacaattcattgtcctggaa
actcgaaaggatggagtgaaatttaccaacacaaagcttaaaaagttaggggatcagtat
caaagaatagttgaagagtataagagttgtcagaaagagcttgttaaccgagttattcaa
actacaacaactttctctgaggtgttctggtctgtagctgggttgctctctgaattggat
gtcttacttagttttgctgatttggcctctagttgtcctactccttacactaggccagtc
atcacgccaccggatgaaggggatattatattagaaggcagtagacatccctgtgtggag
gctcaggactgggtgaattttatacccaacgattgtaaacttgtgagaggaaagagttgg
ttccaaatcatcacaggacccaatatgggtggtaaatcaacatttatccgacaggttggt
gtgaatattctgatggcacaagttggttgtttcgttccttgtgactcagctagcatttct
gttcgtgattgcatttttgctcgggtgggagctggcgactgccaactacgtggagtttct
acctttatgcaagaaatgcttgagactgcatctatactgaaaggagctacagacaagtca
ctaataattattgatgagttaggccgagggacttcaacttatgatggattcggtttagct
tgggccatttgtgagcaccttgttgaagtgattaaagcacctaccttattcgcaacccac
tttcatgaattaactgctttagctcatgaaaatgtcgttgaggacactaatatgaagcaa
attgttggcgtagcaaactatcatgttagtgcacatattgactcatcaagccgcaagttg
actatgctgtacaaggttgagccaggggcttgtgatcaaagtttcggtattcaagttgca
gagtttgcaaactttcctgaaagtgttgtttcccttgctcgagaaaaagctgctgaactg
gaggatttctctgctactacagtcacgccaaatgatgctacagaagaggttggtttgaag
cgtaagagagagcacgacgctggtgatacgtctaaaggagctgctcgggcgcacaagttt
ctggaggagttttctaatctgccattggagacgatggatttaaagcaggctctgcaaaga
gtttgcaagatgaaggatgagttgcaaaaggatgcagctaattcccaatggctccagcag
tttttctag
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