Malus sylvestris (European crab apple): 126626938
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Entry
126626938 CDS
T09027
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1 isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03022
Basal transcription factors
msyl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
126626938
09124 Replication and repair
03420 Nucleotide excision repair
126626938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126626938
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126626938
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
126626938
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
126626938
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
126626938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
126626938
NCBI-ProteinID:
XP_050152296
LinkDB
All DBs
Position
6:20725427..20731734
Genome browser
AA seq
767 aa
AA seq
DB search
MGHGDKGGRPSKKPKFSAKELAHVEDDDPYYGGEDVDDDPRDGEGKKRDFTKLELKPDHA
NRPLWACADGRIFLETFSALYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLE
TETIISVLNKLSKTKLPKEMIEFIHGSTANYGKVKLVLKKNKYFVESPFPEVLKTLLKDE
VISRARLNSEGSRGADDFTISKTMGEIGAGPSDLLNEAELAAAAEEKETHAFEIDPSQVE
NVKERCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSG
IIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDS
KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAQMFRKVI
SITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT
KEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALVEYAM
KLRKPMIYGATSHVERTKILEAFKTSRDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSR
RQEAQRLGRILRAKGRLQDRMAGGKEEYNAFFYSLVSMDTQEMYYSTKRQQFLIDQGYSF
KIITSLPPPDSGPELNYHHLNDQLSLLSKVLSAGDDAVGLEQLEEDADDIALHKARRFSG
SMSAMSGANGMVYMEYSTGRNKFGKGQIKGKPKDPAKRHHLFKKRFT
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgggacacggtgataaaggaggcagacccagtaaaaaacccaaattctccgccaaggaa
cttgctcacgtggaagacgacgacccatattacggcggcgaagatgtcgacgatgatcct
cgcgacggtgaagggaaaaagagggattttaccaaattagaactgaaacctgaccacgcc
aatcggcctttatgggcttgcgctgatggccggatattcctcgaaaccttctctgctttg
tacaaacaagcttatgatttcctaattgccattgcggaacccgtttgcaggccagagtcg
atgcacgagtacaatttgacccctcattcgttgtacgcggctgtgtcagtcggtcttgag
acagaaaccatcatttctgttttgaataaactgtcaaagaccaagctccctaaagaaatg
attgaatttatacacggttctactgccaattacggcaaagtgaagctcgttcttaagaag
aataagtattttgtcgaatccccattcccagaggtgttgaagacattgcttaaggacgaa
gtcatatctagagcaaggcttaactctgagggttctcgtggagctgatgattttaccatt
agcaaaacaatgggtgaaattggagctggtcccagtgatttgctaaatgaagcagaactg
gcagctgcagctgaagaaaaagaaactcatgcatttgaaattgatccttcacaggttgaa
aatgttaaggaacgttgcttgccaaatgctttgaactatcccatgttggaggagtatgac
ttcagaaatgatacagttaaccctgatctagatatggaactaaagcctcaggctcaacca
cgaccttatcaggagaagagcttgagtaaaatgtttgggaatgggagagcaagatctggc
attattgtgctaccctgtggtgccggaaaatctctagttggtgtttctgcagcttcccgg
ataagaaagagctgcctttgtttagcaacaaatgctgtctctgttgatcagtgggctttt
cagttcaagttgtggtcaacaatccgcgatgatcaaatttgtcgtttcacatctgatagt
aaagaaaggttccgtggaaacgctggggtggttgtaacaacatataacatggtagccttt
ggtggaaagaggtcagaagaatctgaaaagattattgaagaaataagaaatagagaatgg
ggattgcttctcatggacgaggtgcacgttgttcctgctcaaatgtttcggaaggtcatt
agcattactaagtctcactgcaagctggggctcactgccacacttgtgagagaggatgag
aggatcacagatttgaacttccttattggtccgaaattgtatgaagcaaactggttggat
ttggtaaaaggtggatttattgcaaatgtacagtgcgctgaagtatggtgtccaatgaca
aaagaattctttgcagaatatttgaagaaagagaactccaagaaaaagcaggcactttat
gtgatgaatccaaataagtttagggcatgcgagtttcttatacgtttccatgaacagcaa
cgtggagataaaattatcgtctttgctgacaatctttttgcgcttgtggagtatgcaatg
aaacttcggaaacctatgatctatggtgccaccagccatgttgagaggacaaaaatccta
gaagcttttaaaacaagtcgtgacgtaaacactatattcctgtctaaggtcggtgataat
tccatagatattcctgaggcaaatgtgataattcagatctcgtcacatgctggttcaaga
cgtcaagaagcgcagcgtcttggtcgtattctgagggctaagggtagacttcaggaccgg
atggcaggaggtaaagaggagtacaatgcattcttttattccctcgtatcaatggacaca
caggaaatgtactattcaactaagcggcagcaatttttgattgatcaaggttatagtttc
aagattattacaagcttgcccccgcctgattcaggccctgaattgaactaccaccatctt
aatgaccaactgtcactactctccaaggtgttgagtgctggtgatgatgcagttggtttg
gagcaactagaagaagatgccgatgacattgcccttcataaagctcgccgtttcagtgga
tccatgagtgctatgtcgggtgcaaatgggatggtttacatggaatacagcactgggaga
aacaaatttggcaaaggccagatcaagggtaagcccaaggatccagccaagcgacatcat
ttgtttaaaaaacgctttacctga
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