KEGG   Malus sylvestris (European crab apple): 126627190
Entry
126627190         CDS       T09027                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03018  RNA degradation
msyl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    126627190
  09123 Folding, sorting and degradation
   03018 RNA degradation
    126627190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msyl03019]
    126627190
   03041 Spliceosome [BR:msyl03041]
    126627190
Messenger RNA biogenesis [BR:msyl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     126627190
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     126627190
Spliceosome [BR:msyl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    126627190
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 126627190
NCBI-ProteinID: XP_050152584
LinkDB
Position
6:complement(34919232..34922881)
AA seq 98 aa
MSSGPGLESLVDQTISVITNDGRNIVGVLKGFDQSTNIILDESHERVFSTKEGVQQLVLG
LYIIRGDNISIVGELDADLDSTVEWSKMRAYPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtccagtggccctggtcttgagtcactcgttgatcaaacaatttcagttatcacaaat
gatggacggaatattgtgggagtcttgaaaggctttgaccagtctactaatattattctt
gatgaatctcatgaacgtgttttttctacaaaggagggtgttcagcaactcgtgttgggg
ttgtacataatcagaggtgacaacataagcattgttggggaattagatgcagatcttgat
tctactgttgagtggtcgaagatgagagcttatcccctcaagcctgtcatccactga

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