Malus sylvestris (European crab apple): 126627193
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Entry
126627193 CDS
T09027
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E
KO
K07466
replication factor A1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03030
DNA replication
msyl03420
Nucleotide excision repair
msyl03430
Mismatch repair
msyl03440
Homologous recombination
msyl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
126627193
03420 Nucleotide excision repair
126627193
03430 Mismatch repair
126627193
03440 Homologous recombination
126627193
03460 Fanconi anemia pathway
126627193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msyl03000
]
126627193
03032 DNA replication proteins [BR:
msyl03032
]
126627193
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126627193
Transcription factors [BR:
msyl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
126627193
DNA replication proteins [BR:
msyl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
126627193
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
126627193
MMR (mismatch excision repair)
126627193
DSBR (double strand breaks repair)
HR (homologous recombination)
126627193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
zf-CCHC_3
CDC24_OB3
DUF223
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
126627193
NCBI-ProteinID:
XP_050152587
LinkDB
All DBs
Position
6:complement(1864491..1868094)
Genome browser
AA seq
869 aa
AA seq
DB search
MDVRLTEGAIMKMCTEELNDGSFQPILQVMDVKLVHTAARNGAQPGQDKERYRVVISDGS
HYQQGMLGTQKNTLVRQGMLQSGSIVCLKQFTCNAIQNRLIIIIIELDLVLDKCDFIGNP
VPGPKYSNAQSSGTSPGNSQSLGGTANSGSTVHQTGTGATPEQPRVNQSFGSAASAYSSN
AEPGRNATMNTPSNYPKPESGFGFPGSAPSSGSYGNQSIGFHNPRSEVPQPPPNSYARPP
QPAYQQPPPVYTNRGPVAKNDAPPRIMPIAALNPYQGRWTIKARVTAKGELRRYNNTRGD
GKVFSFDLLDAHNGEIRATCFNAVADQFYNQIEVGKIYLVSRGSLKPAQKNFNHLNNDHE
ILLDNSSVIQSCFEDDGSIPHHNFNFSPINLVEGLENNTIVDVIGVVSFISPPASIMRKN
GVETQKRTLHLKDMSGRSVEVTLWGNLCNAEGQRLQVMCDSGLFPVLAVKGARVNDFNGK
AVGTISTSQLLIEPNIEKAQEVRNWFEKEGKNTSCISISRETAGVGRTENRKTLSQIKDE
KLGTSEKPDWITVGATISFIKVDSFCYSACPLMIGDRQCSKKVTNNGDGTWRCERCNESV
EACDYRYILQFQIQDHTDSTWVTAFQEGGEEIMGIPAKDLYFIKFEEQDDEKFAEIIQKV
LFTKFIFKLKVKEETFSDEQRVKSTVIKAEKVNHSSHARFHLELMDKLKMENISSSASKG
DNLMPSAGMNVAGVGNTAIRQPTPAVNVGYSNNAGREFGAPENQAGHHGNQYGGTFLSGG
SAGSYQICKSCGDAGHSSMNCPTVMNGAGQSSGVGYNNRVSSRPGISNTSGECYKCHQPG
HWARDCPGLNTTPAYGSSGINRGTYGVSN
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaggttaacagaaggggcgataatgaagatgtgcacagaggagctcaacgac
gggagctttcagcccatcctgcaagtgatggacgtgaagctggtccatacggcggcgcga
aatggagctcagccgggccaagataaggagagatacagggttgtgatctccgacgggtcg
cactaccagcaggggatgctgggcacccagaagaacacactggttcggcaaggtatgctt
cagagcggctccatcgtctgcctcaaacagttcacctgcaacgcaatccaaaaccgcctg
attatcattataattgaattggatttggtgcttgacaaatgtgatttcattggcaatcct
gtaccgggacctaagtattcgaatgcacagtcgtcagggacgtcacctggaaattctcaa
tctcttggtggcactgcaaattctggcagcacagttcatcaaactggcacgggggctact
ccagaacagcctagagtaaatcaatcatttggtagtgcagctagtgcttactctagtaat
gctgagccaggaagaaatgctactatgaatacaccttccaattaccctaaaccagagtct
ggatttggttttcctggatcagcaccatcaagtgggtcatatggcaatcagagcataggt
tttcacaaccctagatctgaagttcctcagccaccaccaaattcatatgcccgcccacct
cagcccgcatatcagcagccacctccggtgtatactaatagaggaccagttgccaaaaat
gatgctcctccaagaataatgccaattgctgctctgaatccatatcaaggaaggtggaca
atcaaggctagagtgacagctaaaggagaacttaggcgctataacaatactcgtggcgat
gggaaagtattttcttttgatcttcttgatgctcataatggagaaattcgagcaacctgt
tttaatgctgtggctgatcaattctacaaccagattgaagttggtaagatttatttggtc
tccaggggtagtttaaaaccagctcaaaagaatttcaaccacctcaacaatgaccatgaa
attcttttagataactcatcagtaatacagtcatgttttgaggatgatggttcgattcca
catcataatttcaatttcagtccaataaatcttgttgaaggcttggagaacaacactatt
gtggatgtaataggtgtggtatcatttatcagtccccctgcctctataatgaggaaaaat
ggtgttgagactcagaagagaaccctccacttgaaggacatgtctggtcgtagtgttgaa
gtaactctttggggaaatttgtgcaatgcagaaggacaaagactgcaggttatgtgtgat
tctggtctattcccggtgcttgctgtaaaaggtgctagagtcaatgacttcaatgggaag
gcggtggggaccatttccacaagtcagcttctgatagagcctaatatcgagaaggctcag
gaggtgaggaactggtttgagaaggaaggaaagaatacctcatgtatctctatttccagg
gaaacggcaggtgtgggtagaacagagaaccgaaagacgttatcccaaattaaagatgag
aagctagggacttccgagaagccagattggatcacagttggtgcaaccatttcatttata
aaggttgatagtttttgctattcagcatgcccactcatgattggtgatcgacaatgcagc
aaaaaggttacaaataatggagatgggacttggaggtgtgaaagatgcaatgagtccgta
gaagcatgtgactacagatatatactccagtttcagatacaggaccatactgactcaaca
tgggtaactgcatttcaggagggtggtgaggaaatcatgggaatacctgcaaaagatttg
tattttatcaaatttgaagagcaagatgatgagaagtttgcagaaatcattcagaaggtt
ctctttaccaaattcattttcaagttgaaagtaaaggaggagacttttagtgatgagcaa
cgtgtaaaatcaacagttatcaaagccgagaaagtgaaccattcatcgcatgctagattt
catttggaattgatggataaacttaagatggaaaatattagttcttctgcctccaaaggg
gacaatctaatgcctagcgccggaatgaatgttgctggagtcgggaacactgcaattaga
cagcccacccctgctgtgaatgttggttatagtaacaatgctggtagagaatttggagca
ccagaaaatcaagcgggtcaccatgggaatcagtatggcggtacgtttctttcagggggt
tctgctggttcatatcaaatatgtaagagttgcggggatgctggccatagctcaatgaac
tgcccaactgtaatgaatggcgcaggacagtcatcaggagtgggctataacaatagagtg
tcttctaggccaggtatcagcaatacttctggtgaatgctacaaatgccaccaacctgga
cactgggcaagagactgtcctgggttaaacactactccagcttatggaagcagcggaatc
aaccgtgggacatatggtgtttcaaattaa
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