Malus sylvestris (European crab apple): 126627944
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Entry
126627944 CDS
T09027
Name
(RefSeq) E3 ubiquitin protein ligase RIN2-like isoform X1
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
126627944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126627944
Enzymes [BR:
msyl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
126627944
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
126627944
Multi subunit type E3
ERAD complex
126627944
LMBR1L-GP78-UBAC2 complex
126627944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
CUE
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-RING_11
zf-C3HC4_2
zf-C3HC4_3
zf-RING_5
zf-RING_16
zf-C3HC4_4
zf-RING_Vps41
E3_UbLigase_EDD
zf-HC5HC2H
Endonuclease_7
PHD
Motif
Other DBs
NCBI-GeneID:
126627944
NCBI-ProteinID:
XP_050153471
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All DBs
Position
7:31472368..31477483
Genome browser
AA seq
591 aa
AA seq
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MGLRYIAISAACTAISFAGLQLWTETSLVKLKSDGLIAENLINAANFGHVFDLLLGSYTT
VGLLANFVLNAFILLVLCLKTIFFVELYSSETRKLIERLINYVIYKGTFLPLVIPPTIYH
AGLWSVWLIVLCSLKMFQALARDRLERLNASPSATPLTYFRVYSVLLLVLTVDIFWIRLC
VVIYKTLGLSMFLLLLFEPFSIAFETLQAILVHGFQLLDIWIHHSAWNSSNCESSKLFDT
SAVGLLLEWKGSLTRNLSFVLDMATLLMALGHYVHIWWFHGMAFHLVDAILFLNIRVSIC
ALLSSIVKRIKGFIKLKKALGALHAALPDATSEELRAYDDECAICREPMAKAKRLHCSHL
FHLACLRSWLDQGLNEIYSCPTCRKPLFVGRPENEVHPRSEETSSDEQLARQISLGLGRQ
NTPGHAIPAGVFPNQTQNPAEGDPWRGAGLDSDWLHTWPSQGVDGAGPSTAIGSVGLGRV
QMMMRRLASVGETYAHTALEDGAWSLWPMNAPQVAATGPPIPPADDGRYQGGARNLHMRT
PARTVNDNLANILAMAETVREVLPHMPDDLIFQDLQRTNSVTVTVNNLLQM
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgaggtatatagccatctccgcggcatgtacagcgataagctttgcaggcctc
cagttgtggacggaaacttctttagttaaactaaaatcggatggactaattgcggagaat
ttgattaatgctgccaattttggccatgtatttgatctgcttttgggttcttatactacc
gttggactgctggcaaattttgtactcaatgcatttattttactcgttttatgtctcaag
actatattctttgtggagttgtattcttctgaaactcgcaaattaatcgaacgccttatc
aattatgttatttacaagggcacttttctacccctggtcattcctcctacaatatatcat
gcgggcctgtggtcagtctggttgattgttctttgttctttaaagatgtttcaagctttg
gctcgagatcgacttgaacggttgaatgcatccccttctgccacaccattgacatatttt
cgtgtgtattcagtgttattgctggtgctgactgttgatattttctggataaggctgtgt
gtggtgatatataaaacactgggtttatctatgtttctcttgttattatttgagcctttc
agtattgcatttgagacattgcaggctattttggtgcatggatttcagttacttgatata
tggatccatcattcagcatggaacagttcaaattgcgagagttccaaattatttgataca
tcagcagttggtttattgttggaatggaaaggcagtcttactcggaatttgagctttgtt
cttgatatggccacattgttaatggcccttggtcactacgtgcatatttggtggtttcat
ggcatggcattccatctggtggatgcaatcctttttctaaacatacgtgtaagtatttgt
gccttgctaagttcaattgtaaaacgtataaaagggttcatcaaactgaagaaagcctta
ggtgctcttcatgcagcacttccagatgcaacatctgaagaactacgggcatatgatgat
gaatgtgcaatttgtagggaacctatggctaaggccaaaagactacactgcagtcacctt
tttcatcttgcatgcttgagatcttggttggatcaaggtttgaatgagatctattcatgt
ccgacttgtcgcaagccactttttgtaggtagacctgaaaatgaagtacatccccgcagt
gaagaaacttcgagtgatgagcagcttgctcgtcaaataagtttaggacttggtcgacaa
aatactcctggacatgcaatacctgctggtgtgtttcccaatcagactcagaaccctgcg
gaaggtgatccatggagaggtgccggactggattcagattggttgcatacttggccaagc
cagggagttgacggggcaggtccttctacggctataggatctgttggactggggagagtt
cagatgatgatgaggcgtcttgcatctgtaggggagacgtatgcgcacacggcccttgaa
gatggtgcgtggagcctctggcctatgaatgcccctcaggttgctgcaactggtccaccg
attcctcctgcagacgatggaagataccaaggaggagcacgaaatttacatatgaggacc
cccgcacgtactgtgaatgacaacctagcaaacatacttgctatggctgagacagtgagg
gaagttctgcctcatatgccagatgacctaattttccaggatttgcagcgaacaaattca
gttaccgttactgtgaataatcttctccaaatgtga
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