Malus sylvestris (European crab apple): 126628115
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Entry
126628115 CDS
T09027
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126628115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126628115
03041 Spliceosome [BR:
msyl03041
]
126628115
03036 Chromosome and associated proteins [BR:
msyl03036
]
126628115
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
126628115
Spliceosome [BR:
msyl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
126628115
Complex B
126628115
Complex C
U2 SnRNP specific factors
126628115
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
126628115
TFTC complex
126628115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
126628115
NCBI-ProteinID:
XP_050153659
LinkDB
All DBs
Position
7:complement(26775053..26780163)
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQRATGIVCAINGNFSGGKAQEIVVARGKVLDLLRPDENGKIQTLLSVEIFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
AIDPKGRAVMVGACEKQKLVYVLNRDTSARLTISSPLEAHKSHTIVYSICGVDCGFDNPM
FAAIELDYAEADQDSTGQSANEAQKHLTFYELDLGLNHVSRKWSDQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQDKPDLRAVIPRRADLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLDHDNDKVSELKIKYFDTIPVTTSMCVLKSGFLFAASEFGNHSLYQFQAI
GEEPDVESSSATLMETEEGFQPLFFQPRKLKNLVRIDQVESLMPIMDMKVNNLFEEETPQ
IFTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNVSDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDISPVPEGRQRSR
FLAVGSYDSVIRILSLDPDDCMQILSVQSLSGVPESLLFLEVQASIGGEDGADHPANLFL
NAGLRSGILFRTVVDMVTGQLSDSRSRFLGLRAPKLFSISVRGKHAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCSEGVVSVAGNALRVFTIERLGETFNETVIPLRYTP
RKFIVQLKRKLLVIIESDQGAFTAEEREAAKKECFEAAGLGENGNGNVEQMENGGDEEDP
LSDEHYGYPKAESDKWVSCIRVLDPKTATTTCLLELQDSEAAFSICTVNFHDKEYGTLLA
VGTAKGLQFWPKKSVTAGYIHIYRFIDDGKSLELLHKTQVDGVPLALCQFQGRLLAGIGP
VLRLYDLGKKRLLRKCENKLFPNTIVSIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFA
DDCVPRWITASFHIDFDTMAGADKFGNFYFVRLPQDVSDEIEEDPTGGRIKWEQGRLNGA
PNKVEEIVQYHVGDVVSCLQKASLIPGGGECIIYGTVMGSLGSLLAFTSRDDVDFFSHLE
MYMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctcactctccagcgcgccaccggcatagtctgcgccatcaacggc
aacttctccggcggcaaggcccaggagatcgtagtcgcccgcggcaaagttctcgacctt
ctccgcccagacgaaaatggtaagatccagactctcctctctgttgaaattttcggcgca
attaggtcgttagctcagtttaggctcaccgggtctcagaaggactatattgttgtcggg
tccgattcgggtcggattgtgattcttgagtataataaggagaagaatgtgtttgataag
attcaccaggagactttcgggaaatcgggttgtcggaggatagttccgggtcagtatttg
gctattgatcctaagggtagggctgttatggttggggcatgtgagaagcagaagcttgtt
tacgttttgaatagggatacttctgctaggttgacaatttcgtcgcccttggaggcgcac
aagtcacatactattgtgtattcgatatgtggggttgattgcgggtttgataatcccatg
tttgctgccattgagttggattatgcggaagctgatcaggactctactgggcagtcggcg
aacgaggcgcagaagcatttgactttctatgagcttgatcttgggctcaatcacgtatcg
aggaagtggtcggatcaggttgataatggtgcaaatatgctggtcacggttcctggaggt
ggggatggtccaagcggtgtattggtctgtgcggaaaattttgtgatttataagaaccag
gataaaccagatctcagggctgtgattcctaggcgtgcggatttgcctgcagagcgtggg
gttcttatagtttcagcagctatgcacaagcagaagtcaatgttcttttttcttttacag
acagagtatggagatatatttaaggttactctggatcatgataacgataaggtctcagaa
ttaaaaatcaagtattttgatacaattccagttacaacttcaatgtgtgtgttaaaatct
gggtttttgtttgctgcgtcagagtttgggaatcactctttgtaccagttccaggcaata
ggagaagagcctgatgtggagtcttcatcagctacattgatggaaacggaagaaggtttc
cagcctttgtttttccagcccagaaaacttaagaaccttgttaggattgatcaagttgag
agcttgatgccaataatggatatgaaggtcaataatctatttgaggaagaaacacctcaa
atatttacactttgtgggcggggtcctcgttcatccctcaggatactaagacctggttta
gctatcagtgagatggctgtgtcagagcttcctggtgtaccgagtgcggtctggactgtg
aagaagaatgtgtccgatgaatttgatgcatacattgtggtgtcatttgcaaatgctact
cttgtgctttcaattggtgagacggttgaagaagttagtgacagtgggtttctagacact
accccatcacttgcagtttctttgataggtgatgattctctgatgcaagtgcacccaaat
ggaattaggcatattagggaagatggacgtattaatgaatggagaactcctggaaagagg
acgattgtaaaggttggctctaatagacttcaagtagttattgcactgagcggaggagaa
cttatatattttgaggttgatatgactggtcagttaatggaggtggagaagcatgaaatg
tctggagatgtagcttgtctagacatttccccggtacctgaagggagacagagatctcgt
ttccttgcagttggttcatatgacagcgtcattcgtattttgtcattggatcctgatgac
tgtatgcaaattcttagtgtgcaaagtctttctggagttccagaatctctcctctttctt
gaggttcaggcctcaattggtggggaggatggtgctgatcatcctgctaaccttttcctt
aatgctggcttacgctccgggattttattcagaactgtggtggatatggtcacaggtcag
ctctctgattcccgttctcgattcttgggactaagagcaccaaagctattttcaattagt
gtgagaggcaagcatgctatgctttgcttgtcaagtcggccctggcttggttatatccat
caaggacattttctcttaacaccactatcgtatgagacccttgaatatgctgcctcattt
tcatccgatcaatgttcggaaggtgtagtttctgttgctggaaatgctttgagggtattt
actattgaaagattgggagaaacatttaatgaaactgtgattccactgaggtatacccct
agaaagtttatcgttcaactcaaacgaaagcttttggtaattattgaaagtgatcaagga
gcattcacagcagaagagcgtgaagctgcaaaaaaggagtgttttgaggctgcgggttta
ggtgaaaatggaaacggtaatgtagagcagatggaaaatggtggcgatgaggaggatccc
ttatctgatgagcactatgggtatcctaaggcagagtctgacaaatgggtgtcttgcatt
agagttcttgaccccaagacagcaactacaacatgtctgctggagcttcaggatagcgaa
gctgcatttagtatttgtacagtgaatttccatgacaaggagtatggtacacttttagct
gttggcacagcgaagggactgcagttttggccaaaaaagagtgtaacagcaggctatatt
cacatatatagatttatagatgatggcaagtcccttgaacttttgcacaagacacaagtg
gatggtgttcctcttgccttgtgccagtttcaaggaaggttactagctgggattggacca
gtgctccgactctatgatttggggaagaaaaggttgctcaggaagtgtgagaataagctg
tttcccaacacaattgtatcaatccagacctatcgcgatcggatttatgtaggtgacatt
caagagtcattccactactgcaagtataggcgggatgagaatcagttgtacatctttgct
gatgattgtgtaccaagatggattacagcatccttccatatagattttgacaccatggca
ggtgcggacaagtttgggaatttctattttgtgcggttaccacaggatgtttcagatgag
atagaagaagatccaacgggtgggaggataaaatgggagcagggaaggttgaatggcgct
cccaacaaagtagaggagatagtgcagtatcatgttggtgatgtcgtcagctgcttgcag
aaggcatctctaattccaggtggtggggagtgcatcatctatggaacagtgatgggtagc
ttgggttcattgcttgcattcacctcccgtgatgacgttgacttcttttctcacttggag
atgtatatgaggcaggagcatccacctttgtgtggtagagatcacatggcttatagatca
gcgtatttcccagtcaaggatgtgattgatggagatctgtgtgagcagttcccaacattg
cccatggatctgcagagaaaaattgcggatgagttggatagaactcctggagagatactg
aagaaactcgaggagattcgaaacaagatcatttaa
DBGET
integrated database retrieval system
