Malus sylvestris (European crab apple): 126628126
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Entry
126628126 CDS
T09027
Name
(RefSeq) WD repeat-containing protein RUP2-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04120
Ubiquitin mediated proteolysis
msyl04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
126628126
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
126628126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126628126
Enzymes [BR:
msyl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
126628126
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
126628126
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
126628126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
WDR55
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
EIF3I
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_SCAP
WD40_like
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
126628126
NCBI-ProteinID:
XP_050153671
LinkDB
All DBs
Position
7:32756821..32758350
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AA seq
404 aa
AA seq
DB search
MNNFSSGFHFPAQQRISEEERESTEEDKLQEEEGKGSEFNNCDWDFSLSTVVSSTACRGA
ASNTLGVIEFDPSNTVLATGGIARKIRGYSLKSLLPNYDNQICGSSSDSMADLIDHVDAC
DYTICTPAKLSSLRWRPGSDGRVLASGDYDGVVTEYDLETKLPIFERDEHGGRRVWSVDY
SHSDPVLGASASDDGTLQLWDPRHEGGNCVASVQPSDARNPVCCVEFDPFGGALLAVGCA
DRKAYGYDVRKMVSPVSVFDGHRKTVTYVRFLNGRTVVTAGTDGCLKLWDTEDSRAIRTY
KGHANSRSFVGLSVWRNGELIGCGSENNRVFVYDKRWGEPIWVHGFGEVGAGSSNSGGCG
EDLGAFVSSVCWRQVGEEQCTLVAGGSDGVLQVFLGRRKSILVG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacttctcctcaggattccatttcccagcccaacaaagaatttcagaagaagaa
agagaaagcacagaagaagataagctacaagaagaagaaggaaaaggatcagagttcaac
aattgtgactgggatttcagtctctcaacagttgtgtcctccactgcctgccgcggcgcc
gcgtccaacacccttggcgtaatcgagttcgacccatcaaacaccgtcttagccaccggc
ggaatcgccagaaaaataagaggttacagcttgaaatctctcttacccaattatgataat
caaatctgtggaagttctagtgatagtatggcggatttgatagaccacgtcgatgcatgc
gactacaccatttgcactcccgccaagctcagcagcctccgctggcgccccggatccgac
ggccgggtcctggcctccggcgactatgatggcgtcgtcacggaatacgacctcgaaaca
aaactacccatcttcgagcgcgacgagcacggcgggcgcagggtctggagcgtggattat
tcgcattccgatccggttctcggagcgtctgcctccgacgacgggaccctccagctgtgg
gacccgcgccacgagggcggcaattgcgtggccagtgtgcagcccagcgacgctcgaaat
ccggtctgttgcgtggagtttgatcccttcggcggggcccttctggccgttggatgcgcg
gaccggaaggcctacggctacgatgttcggaaaatggtgagcccggtttcggtcttcgac
ggacacaggaaaaccgtgacgtacgtgcggtttcttaacgggcgtacggtggtaacagct
ggcacggacgggtgtttgaagctgtgggacacggaggattcgcgggcgattcggacgtac
aaggggcacgccaatagtcggagctttgtggggttatcggtgtggagaaatggggagcta
atcgggtgcgggtcggaaaataaccgggttttcgtgtacgataagaggtggggcgagccc
atttgggtgcacgggtttggggaggtgggtgcaggaagtagtaatagcggtgggtgcggt
gaggacttgggcgcgtttgtaagtagcgtgtgctggcggcaagttggtgaggagcagtgc
acgctcgtggcgggtgggtcggatggggttttgcaggtttttttgggaaggaggaagtcc
attctagtcggataa
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