Malus sylvestris (European crab apple): 126628274
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Entry
126628274 CDS
T09027
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03030
DNA replication
msyl03410
Base excision repair
msyl03420
Nucleotide excision repair
msyl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
126628274
03410 Base excision repair
126628274
03420 Nucleotide excision repair
126628274
03430 Mismatch repair
126628274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msyl03032
]
126628274
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126628274
DNA replication proteins [BR:
msyl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
126628274
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
126628274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
RCF1-5-like_lid
PTCB-BRCT
AAA_30
AAA_22
Rad17
AAA_19
BRCT_2
Gp44_lid
AAA_18
nSTAND3
AAA_5
RuvB_N
AAA_16
AAA_14
AAA_assoc_2
AAA_24
Zeta_toxin
Sigma54_activ_2
AAA_17
AAA_28
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
126628274
NCBI-ProteinID:
XP_050153853
LinkDB
All DBs
Position
7:complement(7001417..7014106)
Genome browser
AA seq
959 aa
AA seq
DB search
MADIRKWFMKSHDKGNTKKPEATVSQKTEPKEPVQGGQENSGRRKTSKYFPTDKPKDEKG
TTEVPAKRKPHKDPDESIKPSPAKKAHKVDVDDDDDFVSSNSKKKSVYATPSKKLKSTSG
TGIPQKVMANDEAGDEDEKVAESSLKPAGRGRGGRGASAVPAGGRGRGAGRGGFMNYGER
KDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTNYL
LCDEDIEGRKSSKAKELGTAFLTEDGLFGKIRASIGAKVPVQEAKKSVDDAAAASLPSKS
PKKVTLKKDCTGSLLASSASSKQLQSDASLARRKKQTTEHSTFTWTEKYRPKVPNDIVGN
QSLVKQLHDWLSHWNEQFLDTGDKKKGKNPINSGAKKAVLLSGTPGIGKTTSAKLVSQML
GFQAIEVNASDSRGKADSKIEKGIGGSNANSIKELVSNKGLSMDGSKHPKTVLIMDEVDG
MSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLM
QVANAEGLQVNEIALEELAEKVNGDMRMAVNQLQYMSLSMSVIKYDDVRQRLLSSSKDED
ISPFTAVDKLFGFNAGKLRMDERVDLSMSDPDLVPLLIQENYVNYRPSAAVKDDSGIKRL
NLIARAAESIGNGDIFNVQIRKYRQWQLSQSACLSSSIIPAALLRGQRETLEQGERNFNR
FGGWLGKNSTLGKNRRLLEDLHVHLLASRESSSGRETVRVEYLSLLLKRLTVPLRELPKD
EAVQEVVEFMNTYSISQDDFDTIVELSKYQGHPNPLDGIVPAVKAALTKAYKEGSKTRMV
RAADFVTIPGMKKAPKKRIAALLEPSDDAIGENNDDTLVQSEDENSSDTEDLEDSAVGEK
LQKELQSLNTKGVQVQFDLKGAPNTSAKKTPAGRGRGGSAAASVKKGGRGSGAGAKRKR
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggccgatattaggaagtggtttatgaagtcgcacgacaagggaaacaccaaaaaaccg
gaggcgaccgtttcacagaagactgagcctaaagaaccagtgcaaggaggtcaagaaaat
tctggcaggaggaaaactagcaagtatttccccacagataagccaaaagatgaaaaagga
acaactgaagttccagccaaaagaaagcctcacaaggatcctgatgaatctattaaaccc
tcacctgcaaaaaaagctcacaaagttgatgttgacgacgatgacgattttgtctcttcc
aattcgaagaagaaatcagtgtatgccactcctagtaagaaattgaagagcacgtctggc
acaggaatcccacagaaggttatggctaatgatgaagctggcgatgaagatgaaaaggtt
gccgaatcatccctcaagccagctggtcggggtcgtggtggaagaggtgcttcggcagtt
ccagctggtggaagaggcaggggcgctggacgaggcggatttatgaattatggagaaagg
aaagatcctccacacaagggagaaaaggaagttcctgaaggtgctcctaattgtttagct
ggcttgacttttgtaattagtggtacacttgacagtttggaaagagaagaagcagaggat
ttgatcaaacgtcatggcggtcgtattactggatctgtcagcaagaaaacgaactatctt
ttatgtgatgaagatattgagggaaggaaatcctccaaagccaaagaacttggtacggct
tttcttaccgaggatggattgtttggtaagattcgggcgtctattggtgctaaagtacct
gtacaagaagcaaagaaatctgtggatgatgctgcagcagcatctttgcccagtaaaagc
cctaagaaagtaacattgaagaaagattgcaccggaagcttgttggcatcaagtgcatct
agcaaacagttgcagtcagatgcctcccttgctaggcgtaagaagcaaactaccgagcat
tctacttttacttggacagaaaaatataggccaaaggttcctaacgacattgttggtaat
caatcactggtaaagcagcttcatgattggttgtcacattggaatgagcaatttcttgat
actggagataagaaaaaaggaaaaaacccaatcaattctggtgcaaaaaaggctgtactt
ttaagtggaacacctggtatagggaaaacgacgtctgcaaagttagtcagccagatgctt
ggtttccaggcaattgaggtaaatgctagtgacagtcgtgggaaagctgattcaaagatt
gaaaagggaattggtggaagcaatgcaaattcaattaaagagcttgtcagcaacaagggc
ctgagcatggatggatcaaagcatccaaaaactgtgctgattatggatgaggttgatggg
atgtctgctggagatcggggaggagttgctgatcttattgcaagcataaagatttcaaaa
attcctatcatctgcatttgtaatgatcgttacagtcagaaactgaaaagtcttgtgaac
tactgtttgcttctcagctttcgcaaacctaccaagcaacagatggcaaagaggttgatg
caagttgcaaatgctgaaggccttcaagttaatgagattgctcttgaggaacttgcagaa
aaagttaatggagacatgcgaatggcagttaaccaattgcaatatatgagcctctcaatg
tctgtcattaaatatgatgatgtacggcagcgtttattaagcagttcaaaggatgaagat
atttcaccattcacagctgttgacaagctgtttggttttaatgctggaaagctgcgaatg
gatgagcgagttgacctgagcatgagtgatcctgacctagtccctcttctaatccaggaa
aattatgtcaactataggccaagtgcggctgttaaagatgatagtgggattaaacgtctg
aacttgattgcccgtgccgctgagtctattggcaatggagatattttcaatgtacagatt
aggaaatatcggcagtggcagctttcccaaagtgcttgtctttcatcctctataattcct
gctgcattgttgcgggggcaaagagagacacttgagcagggagaaaggaattttaataga
tttggagggtggctgggaaagaactcaacattaggaaagaatcgtaggctcttggaagat
ttgcatgtccatcttcttgcttctcgtgaatctagttcggggagggaaacagtgcgagtt
gaatacctttctcttcttctgaaacgattgactgtgcctctccgtgaactgcctaaggat
gaagcagtgcaggaagttgtggagttcatgaatacttactccattagtcaggatgacttt
gatactattgtggagttatccaaatatcaggggcatccaaatccgctagatggcatagtg
cctgctgtaaaagcagctctgacaaaagcatacaaagaaggaagcaaaacaaggatggta
cgagctgcagattttgtcactattcctggaatgaaaaaggcccctaagaagcggattgct
gctcttttagaaccatctgatgatgcaattggagagaacaatgatgatactttggttcag
agtgaagatgagaattcgtcagatacagaggacttggaagattctgctgttggtgagaag
ctgcaaaaggaactgcaaagcttgaacacaaaaggagtgcaagtacaattcgatttgaag
ggtgcgccaaatacaagtgcaaagaagacaccagctggcagaggtagaggtggttctgct
gctgccagcgtgaaaaagggcggccgaggttccggagctggtgccaagagaaagagatga
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