Malus sylvestris (European crab apple): 126628464
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Entry
126628464 CDS
T09027
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126628464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126628464
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126628464
Spliceosome [BR:
msyl03041
]
Complex C
Other components
Step II factors
126628464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
Helicase_C
DEAD
OB_NTP_bind
IBR
AAA_19
AAA_22
zf-RING_UBOX
HA2_C
IBR_1
HA2_N
zf-C3HC4
ResIII
zf-C3HC4_2
IBR_2
AAA_30
RsgA_GTPase
AAA_29
ABC_tran
Arc_MA
Motif
Other DBs
NCBI-GeneID:
126628464
NCBI-ProteinID:
XP_050154127
LinkDB
All DBs
Position
1:9855297..9861893
Genome browser
AA seq
1721 aa
AA seq
DB search
MRSSYPRSTFRQPQPSEIPRRLPLRRPDYPPNNFYRQRLPPCRASFIVELLSDHRSLRKH
EIDAVIANCKSRPEGVEISPANRIVASLFYTQWVDALEALVYFWESRLDRVHDLTPKLNR
IVSVPSDLDELRERLIALFAGRIKKLMDGEAVKKWEAKRVWLCNDNERVSKLLGGHNNLW
SFSELNETMKRNRSEIRLVESRIREFKSAMNCLLDYLEEKGAEETGEEGVKVFKFSGEDF
DWSQIQSLIVRECSRLEEGLPIYAYRQQILQQILSQQVMVLIGETGSGKSTQMVQYLADS
GIAAEQSIVCTQPRKIAAMSLSQRVKEESSRCYGGNSVSCNSTFLSGQGLVSKVTFMTDH
CLLQHYMNDTNMSGISCIIVDEVHERSLNTDLLLACLKDLLGRRSSLRLIIMSATVDANV
LSDYFYGCGIFSVTGRSFPVDVRYVPCFSEGTSSDASYVSDVLRVAADVHRKEKEGTILA
FLTSQLEVEWCCEKFIAPGAIALPLHGKLSFEDQFNVFKNYPGKRKIIFATNLAETSLTI
PGVKYVIDSGMAKESKFEPGSGMNVLKVCMISQSSANQRSGRAGRTEPGVCYRLYSEYDF
EAMPPCQEPEIRRVHLGVAVLRILALGVKNLQDFKFIDAPSSEAIDLAIRNLVQLGAVMQ
KDDVFELTQEGRCLVKLGVEPRLGKLILGCCDLNLRIEGLVLAAVMANSSSIFCRVGNDE
EKIRSDCIKVKFCHRDGDLFTLLTVYKEWDSLSRDKRNTWCWENSINAKTMRRCQDTVME
LESCLKHELNMIISGTWRWDPHESTGCDKHLKKVILSSLADNVAMFSGYDQLGYEVALTG
QHVRLHPSCSLLVFGEKPSWVVFGEILSVSNQYLVCVTSFDFNSLSTLYPPPSFDVSKME
SRKLQLKMLTGFGITVLKRFCGKGNSYLLHLVSRIRAICKDELINIKVDYCQNEIMLFAA
SHNMDRVESFVNDALEREQKWMRNECLEKCLYHSSGVLPPVALFGAGAEIKHLELQKRCL
TFDVFHSKLDSEDDKELLSELEKSISGSICAIHKFTSTGQENVDKGKGVRVTFQTPEAAQ
KAAELNESEFNGSILKVIPSQVGGDHKMFSFPAVRAKVYWPRRLSKGFAIVKCHMNDTHP
MIDDFSNLEVGGKVIRCEISKRDTDAIMIYGLSKDLSEAEILNVLRTATSRRILDFFLLR
GDAVGNPSCSSCEEALLKEISPFMPKRYSHNSCSVQVFEPEPKNVFMRALITFDGRLHLE
AARALEELEGKVLPGFLPWQKMKCQQLFHSSLSCPAPVYLVIKKQLDSLLSSFMHLNGVE
CNLDRNSNGSYRVKISANATKIVADLRRRVEELVKGKIIDHVSLTPAVLQILFSRDGISL
MHTLQRETGTYILFDRRSLSVQVFGSSDQVGVVEKKLVDSLLTLHDNKLLEVRLQGNALP
PELMKEVVNRFGPDLRGLKEKVPGADFSLNVRRQVISIHGSKDVKQKVEESIYEIVQMSG
SSTQRFKSDVDCPICMCEIEDEYRLEDCSHLFCRSCLVEQCESTIKNQDSFPMFCAHKGC
RSLILFSDLKSLLPSEKLEELFRSSLGAFVASSGGIYRFCPSPDCSSVYQVAAPGTDGEP
FVCGACYAETCTRCHLEHHPYLSCEQYREFKEDPDSSLKKWCKGKEHVKSCPVCRYTIEK
IDGCNHIECRCGKHICWVCLEYFGTSDECYTHLRTIHLAII
NT seq
5166 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcgtcgtaccctcgctctactttccggcaacctcagccctcggaaattccccgc
cgtttgcctctccggcgacccgattacccgcccaacaacttctaccgccaacgccttcct
ccctgccgcgcaagcttcatcgtcgagcttctctccgaccaccggagcctccggaagcat
gaaatcgacgctgtgatcgctaactgcaagtccaggcccgaaggcgttgagatttctccc
gccaatcgcatcgtcgcctccttgttctacacgcaatgggtcgacgcgctcgaagccctc
gtttatttttgggagtcccggctggaccgggttcatgatctcactcccaagttgaaccgg
atcgtctctgttccctccgatctcgacgagctccgggagaggctgatagccctgttcgcc
ggccggattaagaaattgatggacggagaggcggtgaagaagtgggaggcgaagagggtc
tggttgtgcaacgacaacgagcgagtttcgaagttgcttggtgggcataacaatctgtgg
agtttcagtgagttgaatgagacgatgaagaggaacaggagcgaaattcgattggttgag
agcaggattagggagttcaagtccgccatgaattgcttgcttgattatcttgaggagaag
ggcgcggaggaaactggtgaagaaggcgtgaaagtgttcaaattttcgggtgaagatttt
gattggagtcaaattcagagcttaattgttcgggaatgcagcaggcttgaagaagggttg
cccatttacgcttatcggcagcaaattcttcagcaaattcttagccagcaggtcatggtg
ttgattggagagactggctcagggaagagtacacagatggtgcagtatcttgctgattct
ggaattgctgctgagcagtccattgtatgcactcagcctcgtaagattgctgccatgtcg
ttatcgcaaagagttaaagaagaaagtagtaggtgttacggaggaaactcagtatcatgc
aattcaacatttttgtcagggcaggggttggtttctaaggtgacatttatgacagatcac
tgtttactgcagcactacatgaatgatacgaatatgtcaggtatttcttgtatcatagtt
gatgaggttcatgagaggagcttgaatactgatctcctgttggcatgtttaaaagattta
cttggtcgaaggtctagtttacgacttattataatgtcagcaacagttgatgccaatgtg
ttgtccgactatttttatggttgtggaatattttctgtaacggggaggagctttcctgtt
gatgttagatatgtaccgtgtttcagcgaaggaacttctagtgatgcttcctatgtttct
gatgtgctgagggtagcagcagatgtacacaggaaagagaaagaggggacaattcttgcc
tttttgacttcccagttggaagtagaatggtgttgtgagaagtttatagcacctggtgca
attgcattgccattgcatggaaaactttcttttgaagaccaatttaatgttttcaaaaac
taccctggaaaaaggaaaattatatttgccactaatctggctgagacatcactgacaatt
cccggggtaaagtatgtgattgattctggtatggctaaagaaagcaaatttgaaccggga
agtggcatgaatgttctcaaagtttgtatgatcagccagagttctgctaatcaaagaagt
ggccgtgctggaagaactgaaccaggagtatgttatagactttactcagaatatgacttt
gaggctatgcctccttgtcaggaacctgagatccgcagagttcatcttggtgttgcagtt
ctgaggattctggctttaggcgtcaagaatttacaggactttaaatttatcgatgcacct
tcttctgaagctattgacttggctatcaggaaccttgttcagttgggagctgttatgcaa
aaggatgatgtctttgagttaactcaggaaggtcggtgcttggttaagttgggtgttgag
cctaggcttggtaaattaattcttggttgttgtgaccttaacttacgtatcgagggtctt
gttcttgcagctgtaatggcaaattccagtagcatattttgtagagttggtaacgacgaa
gaaaagatcagatcagactgcattaaggtgaaattttgtcatcgtgatggtgacctcttt
acccttctcactgtgtacaaggaatgggattccttgtctcgagacaagagaaacacatgg
tgctgggaaaacagcatcaatgcaaaaactatgaggagatgccaagacacggtgatggaa
ttggaatcttgccttaaacatgaactcaacatgataatttctggtacctggcgttgggat
ccacatgaatcaactggttgtgataaacatttgaaaaaggttatactatcttcccttgca
gataatgttgcaatgttctcaggttatgatcaacttggttatgaagtggcattaactggg
cagcatgttaggctgcatccttcgtgttcattgctagtattcggggagaaacctagttgg
gtagtctttggtgaaattctgtcagtttctaatcagtatttggtgtgcgtcacctccttt
gatttcaactctctgtctacgctttatcctcctccttcgtttgatgtatctaagatggaa
agtcgaaagcttcagctgaaaatgttgactggttttggcattactgtccttaaaagattt
tgtgggaagggcaacagttatctgcttcatctcgtatcacgtattagggcaatttgcaag
gatgaacttatcaacatcaaagttgattactgtcagaatgagattatgttgtttgccgct
tcacataacatggatagggttgaaagctttgtaaatgatgccttggagcgtgaacaaaaa
tggatgcgtaatgaatgcttggagaaatgcttatatcacagttcaggcgtgttgcctcct
gtagcattgtttggagccggtgctgagatcaaacatctggagcttcaaaaaaggtgtttg
acttttgatgtatttcattcaaaactggactctgaagatgataaggagttacttagtgag
cttgaaaagtctatctctggcagtatatgtgctattcacaagttcaccagcactgggcag
gaaaatgttgacaaaggaaagggggtgagggtaacatttcaaactcctgaagcggctcaa
aaagcagctgagctaaacgaatctgaatttaatggctccatactgaaggttattccttcg
caggtaggtggtgatcataaaatgttttcattccccgctgttagagctaaggtttattgg
cctcgcaggctaagcaaggggtttgcaattgttaaatgccacatgaatgacacccatccc
atgattgatgacttttctaaccttgaagttggaggaaaagtaattcgctgtgagattagc
aaaagggacacggatgctatcatgatatatggactaagcaaagatctttcggaggctgaa
attttaaatgtgttgaggactgctacaagtaggcgaatcctagattttttcctgctgaga
ggagatgctgtaggaaatccgtcatgtagttcttgtgaagaagcactcttaaaagaaata
tcaccctttatgcctaagaggtattcccacaatagctgcagtgttcaggttttcgagcct
gagccaaagaatgttttcatgagagctttgattacttttgacggaagattacacttggaa
gcggcgagagctttagaagaattagaagggaaagtactgcctgggttccttccatggcaa
aagatgaagtgccagcagttatttcatagctctctatcctgtcctgcccctgtctatctt
gtgatcaagaagcagctggatagtttactctcaagttttatgcatctaaatggtgtagaa
tgcaatttggatagaaattctaatggttcctaccgagtgaagatatctgccaatgctaca
aaaattgttgcagacctgagaagacgtgtggaggagcttgtgaaagggaagattatcgac
cacgtcagccttacgccagcagttttacagattcttttctccagagatggcatcagtcta
atgcacacactccagcgagagacaggaacctatattctttttgacagacgtagcctgagt
gtacaggtctttggttcttcagaccaagttggtgtggtcgagaagaaattggtggactcc
cttttaaccctccacgacaataagctgcttgaggtccggcttcaaggtaatgccttgcct
cctgagttgatgaaagaggttgttaacaggtttgggccagacctccgggggctcaaagag
aaggtcccaggggctgattttagtctaaatgttcgccgtcaagtaatttccatccatgga
agcaaggatgtgaagcagaaagttgaagagagtatttatgagattgtacagatgtcaggt
agttcaactcagaggtttaagagtgatgttgattgccccatatgtatgtgtgagattgaa
gatgaataccggcttgaggactgcagtcatttattttgccgctcgtgtttagtggagcag
tgtgagtcaacaattaaaaaccaagatagtttcccaatgttttgtgcacacaagggttgc
aggtctcttattttgttcagtgatctgaaatctctattaccaagtgagaagctggaggag
ctatttagatcttcattgggggcgtttgttgcgtcaagtgggggcatctacaggttttgc
ccgtctcccgactgctcttctgtgtatcaggtagctgctccaggaacagacggtgaacca
tttgtttgtggtgcatgttatgccgagacatgtactaggtgccatttagaacatcatcca
tacctttcatgtgagcagtaccgagagttcaaggaagacccagattcatcgttgaagaag
tggtgcaaaggaaaagaacatgtgaagagctgcccagtttgcaggtatacaattgagaag
atagatgggtgcaaccatatagaatgtcggtgtgggaagcatatttgttgggtctgtttg
gagtattttggaacgagtgacgaatgctatacccatttgaggactattcacctggccatc
atttga
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integrated database retrieval system
