Malus sylvestris (European crab apple): 126628938
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Entry
126628938 CDS
T09027
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126628938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126628938
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
126628938
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
126628938
NCBI-ProteinID:
XP_050154787
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Position
7:32779067..32781783
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AA seq
200 aa
AA seq
DB search
MVMSAVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN
HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW
RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
PVISTIPQQLSRFQFNMISS
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgtcggcggtggtgaacacgtacccactgtcgagctacacgttcgggaccaaa
gagccgaagatggagaaggacacttccgtcgccgatcgcctcgcccgcatgaaagtcaat
tacatgaaagagggaatgcggaccagcgtcgaagcgattttactggtacaggagcataat
catccccacatacttctcctgcagattggaaacacattctgcaaacttcctggtggacga
ctgaagccaggggagaatgaaattgaggggttgaaaagaaagctgaccagcaagcttggt
gctaattcacctgcccttgtaccagactggcagataggagagtgcgtggctatctggtgg
aggccaaactttgaaaccataatgtacccatattgccctcctcacataacaaaacccaag
gagtgtaagaagcttttccttgttcacttatctgagagggagtactttgctgtccccaaa
aacctaaaacttcttgctgttccattgtttgagctctatgataacgttcagagatatggg
cctgttatatctacaatcccacagcagctttccagattccagtttaacatgatcagttca
tga
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