Malus sylvestris (European crab apple): 126629121
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Entry
126629121 CDS
T09027
Name
(RefSeq) E3 ubiquitin protein ligase RIN2-like isoform X1
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
126629121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126629121
Enzymes [BR:
msyl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
126629121
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
126629121
Multi subunit type E3
ERAD complex
126629121
LMBR1L-GP78-UBAC2 complex
126629121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
CUE
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-RING_11
zf-C3HC4_2
zf-C3HC4_3
zf-RING_5
zf-RING_16
zf-C3HC4_4
zf-RING_Vps41
E3_UbLigase_EDD
zf-HC5HC2H
PHD
Endonuclease_7
Motif
Other DBs
NCBI-GeneID:
126629121
NCBI-ProteinID:
XP_050154973
LinkDB
All DBs
Position
1:25513289..25518404
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AA seq
591 aa
AA seq
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MGLRYIAISAACTAISFAGLQLWTETSLVKLKSDGLIAENLINAANFGHVFDLLLGSYTT
VGLLANFVLNAFILLVLCLKTIFFVELYPSETRKLIERLINYVIYKGTFLPLVIPPTIYH
AGMWSVWLIVLCSLKMFQALARDRLERLNASPSATPWTYFRVYSVLLLVLTVDIFWIRLC
VVIYKTLGLSMFLLLLFEPFSIAFETLQAILVHGFQLVDIWIHHSAWDSSNCEGSKLFDT
SAAGLLLEWKGSLTRNLGFVLDMATLLMALGHYVHIWWLHGMAFHLVDAILFLNIRVNIC
ALLSAILKRIKGFIKLRKALGALHAALPDATSEELRAYDDECAICREPMAKAKRLHCSHL
FHLACLRSWLDQGLNEIYSCPTCRKPLFVGRPENEVHSRSEGTSNDEQLARQISSGLDRQ
NTPGHAIPAGVFPNQAQNPAEGDPWRGAGLDPDWLHTWPSQGVDGAGPSTAIGSVGLGRV
QMMMRHLASVGETYAQTALEDSAWSLWPMNAPQVAATGPPIPPADDGRNQGGARNLRMRT
PSRTVNDNLANILAMAETVREVLPHMPDDLIFQDLQRTNSVTVTVNNLLQM
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgagatatatagccatctctgcggcatgtacagcgataagctttgcaggtctc
cagttgtggacggaaacttctttagttaaactaaaatcggatggactgattgcagagaat
ttgattaatgcggccaattttggccatgtatttgatctgcttttgggttcttatactacc
gtcggactgctggcaaattttgtactcaatgcatttattttactcgttctatgtctcaag
actatattctttgtggagttgtatccttctgaaactcgcaaattaattgaacgccttatc
aattatgttatttacaagggcacttttctacccctggtcatccctcctacaatatatcat
gcgggcatgtggtcagtctggttgattgttctttgttctttaaagatgtttcaagctttg
gctcgagatcgacttgaacggttgaatgcatccccttctgccacaccatggacgtatttt
cgtgtgtattcagtgttattgctggtgctcaccgttgacattttctggataaggctgtgt
gtggtgatatataaaacactgggtttatccatgtttctcctgttattatttgagcctttc
agtattgcatttgagacactgcaggctattttggtgcatggatttcagttagttgatata
tggatccatcattcagcatgggatagttcaaattgcgaggggtctaaattatttgataca
tcagcagctggtttattgttggaatggaaaggcagtcttactcggaatttgggatttgtt
cttgacatggcaacattgttaatggcccttggtcactacgtgcatatttggtggcttcat
ggcatggcattccatctggtggatgcaatcctttttctaaacatacgtgtaaatatttgt
gccttgctaagtgcaattttaaaacgtataaaagggttcatcaaactgaggaaagcctta
ggtgctcttcatgcagcacttccagatgcaacatctgaagaactacgagcatatgatgat
gaatgtgcaatttgtagggaacctatggctaaggccaaaagactacactgcagtcacctt
tttcatcttgcgtgcttgagatcttggttggatcaaggtttgaacgagatatattcatgt
ccgacttgtcgcaagccactttttgtgggcagacctgaaaatgaagtacattcccgcagt
gaaggaacttcgaatgatgagcagcttgctcgtcaaataagttcaggacttgatcgacaa
aatactcctggacatgcaatacctgctggtgtgtttcccaatcaggctcagaaccctgca
gaaggtgatccatggaggggtgcaggactggatccagattggttgcatacttggccaagt
cagggagttgacggggcaggtccttctacagccataggatctgttggactggggagagtt
cagatgatgatgaggcatcttgcatctgtaggggagacatatgcccaaacagccctcgaa
gatagtgcgtggagcctctggcctatgaatgccccacaggttgctgcaactggtccacct
attcctccagctgacgatggaagaaaccaaggaggagcaaggaatttacgtatgaggacc
ccctcacgtactgtgaatgacaacctagcaaacatacttgccatggctgagacggtgagg
gaagttctgcctcatatgccagatgacctaattttccaggatttgcagcgaacgaattca
gttacagttactgtgaataatcttctccagatgtga
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