Malus sylvestris (European crab apple): 126629211
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Entry
126629211 CDS
T09027
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126629211
09123 Folding, sorting and degradation
03018 RNA degradation
126629211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126629211
03041 Spliceosome [BR:
msyl03041
]
126629211
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126629211
mRNA degradation factors
5'-3' decay
Lsm complex
126629211
Spliceosome [BR:
msyl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
126629211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
126629211
NCBI-ProteinID:
XP_050155121
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All DBs
Position
7:780137..783498
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFSQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggaggaaagaaacagttttggacctggccaagtttgtggacaaaggtgtccaa
gtcaagctcaccggcgggagacaagtgacagggactctgaaaggatatgaccagttgtta
aaccttgtcctagatgaagcagtggagtttctaagagattctgatgatccattgaagacc
actgatcagaccaggcgccttggcctcatagtttgcaggggaaccgctgtaatgcttgtg
tcgccgacagatggtacagatgagatcgccaacccttttagccagccagatggtgcctaa
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