KEGG   Malus sylvestris (European crab apple): 126629211
Entry
126629211         CDS       T09027                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03018  RNA degradation
msyl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    126629211
  09123 Folding, sorting and degradation
   03018 RNA degradation
    126629211
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msyl03019]
    126629211
   03041 Spliceosome [BR:msyl03041]
    126629211
Messenger RNA biogenesis [BR:msyl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     126629211
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     126629211
Spliceosome [BR:msyl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    126629211
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 126629211
NCBI-ProteinID: XP_050155121
LinkDB
Position
7:780137..783498
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFSQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtcagggaggaaagaaacagttttggacctggccaagtttgtggacaaaggtgtccaa
gtcaagctcaccggcgggagacaagtgacagggactctgaaaggatatgaccagttgtta
aaccttgtcctagatgaagcagtggagtttctaagagattctgatgatccattgaagacc
actgatcagaccaggcgccttggcctcatagtttgcaggggaaccgctgtaatgcttgtg
tcgccgacagatggtacagatgagatcgccaacccttttagccagccagatggtgcctaa

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