Malus sylvestris (European crab apple): 126629319
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Entry
126629319 CDS
T09027
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
126629319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126629319
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
126629319
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
VWA_2
Motif
Other DBs
NCBI-GeneID:
126629319
NCBI-ProteinID:
XP_050155291
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Position
7:14634110..14639468
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AA seq
684 aa
AA seq
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MARNKDGMVLLIDVSPSMHKALPEIEKVCSMLVEKKLIYNKYDEVGVVLFGTEDTENELT
TEVGGYKHVVVLQNIKVVDGHLVETLQQLPRGTHEGDFLDAIIVGLDMLIKKYGETYKGK
KRLCLITNAQFPTKFPQEGTKEEQVTTIAGHMNKHGMRMESIVVRGKLTGEADKNIMDEN
DHLLGIFSRKTCAKLVHVESPTSLLGALRTRKISPVTIFRGDLELSPKMKIKVWVYKKTS
EEKFPTLKKYSEKAPPTDRFATHEVKVDFEYKSVEDPSKVVPPDQRIKGYRYGPQVIPIS
SAEWDAVKFKPEKSVKLLGFSDAKNIMRHYYMKDVNIFIPEPGNTRAILAVSALARAMKD
MNKVAIMRCVWRQGQGNVVVGVLTPNVSDNDNIPDSFYFNVLPFAEDVREFQFPSFSNFP
ESWQPSEQQQEAADGLVKMLDLAPPGKEEALLPSLTPNPVLERFYRHLELKSRQPDAVVP
PLDETLRTITEPDKELISQNKSIIDVFHSRFELKENPKLKKSSRRFLRDKPSGSKEGEDH
LSITDGPNKVEKIGDTTPVQDFEAMISRRDSPKWVGKAIKDMKNKIHDLVEDSYEGDNYS
KALECLIALRKGCILEQEPKEFNDFLCNLCKFCEEKALGSFCGFLASKELTLIPKREAID
SEVTDDEAKSFLVKSEPKLEAMIE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaacaaggatggtatggttttgttgattgatgttagcccgtcgatgcacaaa
gctcttccagagatcgaaaaagtttgctctatgctagtagagaagaagttgatttacaat
aaatatgatgaagtaggagttgtattgttcggaaccgaagacactgaaaacgaactgaca
acggaagtgggtggatacaagcatgtagtggttttacaaaatatcaaagttgttgatggg
catcttgttgaaactctacaacaactcccacgaggaactcatgagggtgattttcttgat
gccataattgttgggttggatatgctgatcaagaaatatggagaaacatacaaaggaaag
aaacgcctttgtctgattacaaatgcacaatttcctactaaatttccgcaagagggtact
aaagaagaacaagtcaccaccattgccggtcacatgaataaacatggtatgagaatggaa
agcattgttgtgagaggaaaacttactggggaagctgataaaaacataatggatgagaat
gatcatctattgggtatattttcaaggaaaacgtgtgcaaagttggtacatgttgagagt
ccaacttcattgctaggtgctcttagaactcgaaaaatatctccagttacaatattcagg
ggtgatcttgagcttagccccaaaatgaagattaaggtatgggtttacaagaaaacatcg
gaagagaagtttcccactctgaagaaatattctgagaaagcgcctccaacagatagattt
gctacacatgaagtcaaggtggactttgagtataaaagtgttgaagatcctagtaaagtt
gtgcctcctgaccagaggattaagggttatcgttatggccctcaagttattcccatatca
tctgctgaatgggatgctgtcaagttcaagccagaaaagagtgtgaaacttctgggattt
tctgatgctaaaaatataatgcgacattattacatgaaagatgtcaatattttcatccct
gaaccgggtaatacgagggccattcttgctgtttctgccctagcaagagctatgaaagat
atgaataaggtggcaattatgcgctgtgtttggagacaaggacaaggaaatgttgttgtg
ggggtcttaacacctaatgtctcggacaatgacaatatccctgattcattttacttcaat
gtactcccttttgctgaggatgttagggagtttcaattcccatctttcagtaacttcccg
gaatcgtggcaaccaagtgaacaacagcaagaggctgcagatggccttgtcaagatgctt
gaccttgcaccacctggcaaagaggaggctctgctgcctagcttaaccccaaatcctgtc
cttgagcgcttttatcgtcaccttgagttgaagtcaaggcaaccagatgcagttgtacct
ccacttgatgaaactcttaggacgattactgaacctgataaagagcttatttctcaaaac
aagtctattattgatgtctttcatagccggtttgaactcaaagagaacccaaagctgaag
aaatcaagtaggcgatttttgcgagataaaccatctgggtcaaaggagggggaggatcat
cttagcattaccgatggacctaataaggttgagaaaattggggacactactcctgtccag
gattttgaagctatgatcagtcgtagagatagcccaaaatgggttggtaaagcaattaag
gatatgaaaaataaaatacacgacttagtagaggactcttatgaaggggataattattca
aaggcattggaatgtttaattgccctccgcaagggttgtatcctagagcaggaaccaaaa
gagttcaacgatttcctgtgcaatctatgtaaattctgcgaggagaaagcccttggcagt
ttctgtggatttcttgcatccaaggagctcacgttgattcccaagagagaagctatagac
agtgaagttacggatgacgaagctaaaagttttctggtcaaatcagagccaaaattggaa
gcaatgattgagtga
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