KEGG   Malus sylvestris (European crab apple): 126629771
Entry
126629771         CDS       T09027                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1-like
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    126629771
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:msyl03021]
    126629771
Enzymes [BR:msyl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     126629771
Transcription machinery [BR:msyl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     126629771
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 CTD
Other DBs
NCBI-GeneID: 126629771
NCBI-ProteinID: XP_050155844
LinkDB
Position
7:3527487..3544329
AA seq 1961 aa
MEEASTSNILDGEIVGIKFGLATHQEICTASISDCSISHASQLSNPFLGLPLEFGKCESC
GTSEPGKCEGHFGYIELPVPIFHPNHVSELKRMLSLLCLKCLKMKKNKFPTKNSGLAERM
LASCCEDAAQVSIGETKPTDSSCSLQLKRPSKSRTPPGFWNFLERYGFRYGDDHIRTLLP
CEVLEMLKRIPQDTRRKLAAKGYFPQDGYILRHIPVPPNCLSVPEISDGVSVMSADPSIS
MLRKVLKQIEVIRSSRSGIPNFESQIVEANELQAIVDQYLQVRGTGKASRDIDARLGVNR
ELNASSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEVGIPYEIAQRITFEEKVND
HNIRYLQELVDKKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRILDGDLVFVNRPPT
THKHSLQALQVYVHDDHVVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEK
QLLSSHSGKPNLQMATDSLLSLKMMFKNYFLDKSAAQQLAMFASSSLPRPALLKANAARS
YWTALQILQTALPAHFDYCGEKYLVSKSEILKIDFNTSEVSAVMNDVATSVFFVKGGEDV
LKFFDSLQPLLMENIFSEGFSVGLEDFYMSKTSIQDIQKNIQDTSDLLYHLRSTYNEFVE
FQLESRIKNLKVPVSSFILESSAFGDLIDSKSDSAINKVVQQIGFLGLQLSDKGRFYSKT
LVEDVASLYHNKYSFNMEYPSAEYGLVQSCFFHGLDPYEEIVHSIATREVIVRSSRGLTE
PGTLFKNLMAILRDVVICYDGTVRNVCSNSVIQFEYGVNVGSRPPNLFPAGEPVGVLAAT
AMSNPAYKAVLDSTPSSNSSWELMKEILLCKVNFKNELIDRRVILYLSNCGCGRTFCRER
AACLVKNQLKKVSLKDTAVEFMIEYSNQLSSLGSMVNDAGLVGHIHLKEELLRELNVGVD
EIRQKCQETVNSFRRKRVGKKKFNIGYLFKNTVLFASEHCSFHHSCADKRSDSPCLMFFL
QATEELETTSQYYADLICPVLLETIIKGDPRISSANIIWIDPDTTTWIRSPNKSQKGEWA
LDVVLEKSVVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAVQR
LATAVTMVAKGVLKEHLILLANSMTCAGNFVGFNSSGYKALSRALNIQVPFTEATLFTPR
KCFERAAEKCHMDSLSSIVASCSWGKHVAVGTGSRFDILWDTREGGLNQEGGLDVFNFLH
MVSTANGEEATTGALGAEVDDLMVVDELADSCLSPELDSGLDRPVFEDIIEFEDKSETPP
RKSSWENDSSVWGTNTTREDATSSWGKTPAREATTSTWGIDKAAEDTTPAWGTNTAREGA
TSAWGKTREHTTSAGGADKESESDTSSWGKTLPKEPPASTWGIAKAAEDTTPAWGTNTAR
EDATSAWGKTGEPTTSAWGASEKDTPSWGKTPAKETLTSTWGIDKAAEDTAPAWGTSTAR
EDATPAWGKSREKTTSAWGTDKESDNDTSSWGKNPARKPTTSTWGIDKVAEDTTPAWGTS
TATEDATPAWGKSREKTASAWGTNKESENDTSSWGKTPARKPTNSTWGTEKAAEDTTPTS
GTNTAREDATSTWGKTREHTTSTWGTDKASENVWSGRGAEKVAPIDLPPTTKDVDEKDNG
WGAVSSGETETGNENAWVQNKSSEISTGSWGQKNPPETETQPASLSGWDSPSGDGNTGER
HHQWGQNKKSRFEGSKSWVSSPGEWKNKNRPAKPPGMMNDNSSVVGLYTATRQRLDMFPS
EEQDVLSNIEPVMRSIRRIMHQSGYNDGDPLSADDQSFIIDNVLNYHPDKAVKMGSGIGH
LTVDRHGSFQDSRCFFVVTTDGHKEDFSYRKCLENYIKEKYADVAETFIGKYFTRRGGNR
ERNPTPSQYPIPQQTPIQTPIAEETVSQTPISEQTGNEETQ
NT seq 5886 nt   +upstreamnt  +downstreamnt
atggaggaggcctcgacctcaaatattttagatggggaaatcgttggaatcaaatttggt
ttagcaactcatcaagaaatttgcacagcatctattagtgattgctctatcagccatgca
agtcaactttccaaccccttccttggcctgccccttgagttcggaaagtgtgaatcttgt
ggcacttctgaacctgggaagtgtgaaggtcattttgggtatattgagttaccagtacca
atatttcatcctaatcatgttagcgaattgaagcggatgctgagcttattgtgcttgaaa
tgcttgaaaatgaaaaagaacaagtttccaaccaagaattctggcttagcagaaagaatg
ttagcttcatgttgtgaggatgctgcacaagtgtctattggagagactaaaccaacagat
agctcttgttccttgcaattgaagcgaccttctaagtcaagaacaccacctggtttttgg
aatttcctagaacgatatggttttcgttatggtgatgatcatatacggactttgcttcct
tgtgaggtgctggagatgctaaagcgaatccctcaagacaccaggaggaaacttgctgca
aaaggctattttcctcaagatggatacatcttgcgtcatatacctgtccctccgaactgt
ttatccgtgcctgagatttcagatggtgttagcgttatgtccgcggatccttcgatttca
atgcttagaaaagttctaaagcaaattgaagtcatcagaagttcaaggtcgggcataccc
aattttgaatcccaaattgtagaagccaatgaacttcaagcaattgtagatcagtatctt
caagttaggggtactgggaaggcatcacgagacattgatgcaagattaggggttaatagg
gagcttaatgcctcttcaacgaaagcttggcttgaaaaaatgaggacactgttcatcaga
aagggttcaggcttctcttcccgctcagtgattacgggggatgcatataaaagggtgaat
gaagttggcatcccttatgaaattgctcaaagaatcacctttgaggagaaggttaatgac
cataacattaggtacctacaagagctagtagataagaagttgtgcctaacctatagggat
ggttcatcaacttactcattaagggaaggttccaaagggcacacatttttgaggcctggt
caagtggtgcatcggaggattctggacggggaccttgtcttcgtaaacaggcccccaacc
acacacaaacattcactacaagcactacaagtgtatgtgcatgatgaccatgtggtgaaa
ataaatcctctgatatgtgggccactaagtgctgactttgatggtgattgcatccatttg
ttctatccgcaatcgcttgctgcaaaggcagaagttttggagcttttttcagtggagaag
cagctgcttagctctcatagtggaaagccaaatttgcaaatggccactgattcactgttg
tcattgaagatgatgtttaaaaactattttttggataaatcagcagctcagcaactggcc
atgtttgcttcatcttccttgccacgacctgcattattgaaagcaaatgctgctcgctca
tattggactgctttgcagatattacagactgcattgcctgctcactttgattactgtggg
gaaaagtacttagtcagtaaaagtgagatactgaaaattgatttcaatacaagtgaagtt
tcagcagtgatgaatgacgttgctacctcagttttcttcgttaaaggtggcgaagatgtc
ctcaaattctttgattctctacagcccttgctgatggagaacatattttcagaagggttc
agcgttggtttggaagatttttacatgtcaaagacatcaatacaagatattcagaagaat
attcaggatacttcagatttgttgtatcatctgaggtcaacctacaatgaatttgtagag
tttcagttagagagtcgaatcaaaaacttgaaagtaccagtttcaagttttatcttggag
tcatctgcatttggtgatttaatcgactccaagagtgattcggcaatcaacaaagttgta
caacaaattgggttcctaggcctacaactctctgataagggaagattctactcgaagacg
ttagttgaggatgtggcctctctctatcacaacaagtattcttttaacatggagtatccc
tctgcagaatatggactagttcaaagctgtttcttccatgggttagatccatacgaggag
atagttcactccattgctacacgagaggtgattgttcggtcctcaagaggattgaccgaa
cctgggaccttatttaaaaatttaatggccattcttcgggatgtggttatttgctatgat
ggcacggtcagaaatgtatgtagcaattcagtaatccaatttgagtatggagtcaacgtt
ggatctaggcccccgaatctgttccctgctggtgaacctgttggtgtgttagctgccact
gcaatgtcaaatcctgcgtacaaggcagttcttgattctaccccaagcagcaattcttca
tgggagctgatgaaggaaattttgctttgcaaagtcaattttaagaatgagctcattgat
cgccgtgtaattttgtacttgagtaactgtggttgtggaagaacattctgccgagaacgt
gcagcatgtttggttaagaatcagttgaagaaagtcagtcttaaagatactgcagttgaa
ttcatgattgaatatagcaatcagctttctagtttgggaagtatggtaaatgatgcaggc
ctggttggtcatattcatcttaaagaggagctgttaagggagttaaatgttggtgtagac
gagattcgacaaaaatgccaagaaactgttaattcatttcggaggaagagagttgggaag
aagaagttcaacattggctatcttttcaaaaatacagttttgtttgccagtgagcattgc
tcgtttcatcattcctgtgcagacaaaagatctgactccccatgcttgatgttcttcctt
caagctactgaagagttggagaccacttcgcaatactatgctgacttgatttgccctgtg
cttttagaaacaataataaaaggtgaccctcgaatttcgtcggcaaatataatatggatt
gatccagatacaacaacttggattagaagcccaaataaatctcaaaagggtgaatgggct
ttggatgttgttctggagaaatctgttgtcaagcaaagcggtgatgcatggagaatcgtt
ctcgattcttgcctccccgtgcttcacctaattgacaccagacgttccatcccatatgcc
atcaaacagattcaagagctgttgggagtgtcttgtgcttttgatcaagcagttcagcgc
ctcgcaacagctgttacaatggtggcgaaaggtgtcctgaaagagcatcttatcctcctg
gcaaatagcatgacatgtgctggaaattttgttggctttaattctagtggatataaggca
ctatctcgcgcattgaatattcaagtaccatttacagaagcaacactttttacaccaaga
aagtgctttgagagagcagctgaaaagtgccacatggattctttgtcaagcatagttgca
tcatgttcatggggtaaacatgttgctgttggtactggatccaggtttgatatcctgtgg
gacacacgagagggaggattgaatcaagagggtggattagatgttttcaactttctgcat
atggtgagcacagcaaatggagaagaagcaactacgggagcactgggggcagaagttgac
gatcttatggtggtagatgaattagcagattcgtgcttatcgccagaacttgattctggt
ctagatagacccgtctttgaagatattattgaatttgaggacaaatcagaaactcctcct
agaaaatcaagttgggaaaatgattcctctgtatgggggacaaatactacaagagaagat
gccacatcatcttgggggaaaactccagctagagaagctaccacatctacttgggggata
gataaggcagcagaagataccactcccgcatgggggacaaatactgccagggaaggtgcg
acatctgcctgggggaaaactagagagcataccacttctgcagggggcgcagacaaggaa
agtgaaagtgatacatcatcgtggggtaaaactctacctaaagaacctcccgcatctact
tgggggatagccaaggcagcagaagataccactccagcatgggggacaaatactgccaga
gaagatgccacatctgcctgggggaaaactggagaacctaccacttctgcctggggggca
agtgaaaaagatacaccatcttgggggaaaactccagctaaagaaactttgacatccact
tgggggatagataaggcagcagaagataccgctcctgcatgggggacaagtactgccaga
gaagatgccacacctgcctgggggaaatctagagaaaagactacttccgcctggggaaca
gataaggaaagtgataatgatacatcatcttgggggaaaaatccagctagaaaacctacc
acctctacttggggcatagataaggtagcagaagataccactcctgcatggggaacaagt
actgccacagaagatgccacacctgcctgggggaaatctagagaaaaaactgcttctgcc
tggggaacaaataaggaaagtgaaaatgacacatcatcttgggggaaaactccagccaga
aaacctaccaactctacttgggggacagagaaggcagcagaagataccactcctacgtca
gggacaaatactgccagagaagatgccacatctacctgggggaaaactagagaacatacc
acttctacctgggggacagataaggcaagtgaaaatgtttggagtggtagaggggcagag
aaagtcgcaccaatagacctcccgccaacaacaaaagacgtagatgaaaaggacaatgga
tggggtgctgtttcttctggggaaacagaaacagggaatgaaaatgcttgggtacagaat
aagtcttccgaaatttcgactggttcttgggggcagaaaaatcctcccgagacagaaact
caacctgcaagcttgtctgggtgggattcacctagtggagacggtaatactggtgaaaga
catcaccaatggggacaaaacaagaaaagtcgttttgaaggttcaaagagttgggtttct
agtcccggggagtggaagaataagaaccgtcctgctaaaccacctggtatgatgaatgat
aattccagtgtggttggactctatactgcaacaagacaaagattggatatgttccctagc
gaggagcaagatgttctttctaatattgaacctgttatgcgctctatccgaagaataatg
catcaatctgggtacaatgatggggatccactgtcagctgatgaccagtcatttataatt
gataatgttctcaattaccacccggataaagctgttaaaatgggttctggaattggccat
ctcacagttgataggcacggcagtttccaggacagcagatgcttttttgttgtgacaaca
gacggtcacaaggaagatttttcatatagaaaatgcctggagaattacatcaaggaaaag
tatgctgatgtcgccgaaacattcataggcaagtattttaccaggagaggagggaatcgg
gagcgaaaccccactcccagtcaataccccattccacaacagactccaattcaaactccc
attgcagaggaaactgtaagtcaaacccccatttcggagcaaactgggaacgaggagacg
cagtag

DBGET integrated database retrieval system