KEGG   Malus sylvestris (European crab apple): 126629779
Entry
126629779         CDS       T09027                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5C-like isoform X1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03020  RNA polymerase
msyl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    126629779
  09124 Replication and repair
   03420 Nucleotide excision repair
    126629779
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:msyl03021]
    126629779
   03400 DNA repair and recombination proteins [BR:msyl03400]
    126629779
Transcription machinery [BR:msyl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     126629779
  RNA polymerase III system
   RNA polymerase III
     126629779
  RNA polymerase I system
   RNA polymerase I
     126629779
DNA repair and recombination proteins [BR:msyl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      126629779
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N SOCS_box OCC1
Other DBs
NCBI-GeneID: 126629779
NCBI-ProteinID: XP_050155860
LinkDB
Position
7:complement(3221876..3225270)
AA seq 248 aa
MAIVKGDGVVPGSDGGSGRPGCITSHVAEGSVESTRFYLCRRTVMEMLRDRGCNVSDLDL
NLSLTEFLSEFGPNPDHERLSVCVHLRSKPSKKLEIISKKRFFRTKDFVVIVVIFCGTDE
IRKRNMCGIYAGLPNKASIHQLILVLQSKMNCYARKELEKYPFKVDTFHISDLLVNITKH
VSQPKLEMLTAEEKMKLLMKYNLEDKKLPLMLATDATARYYGLEKGQVVKVNYSGGFAGP
LETYRCVA
NT seq 747 nt   +upstreamnt  +downstreamnt
atggctatcgtgaaaggggatggcgtcgttccgggcagcgacggaggcagcggaaggccg
gggtgcataacgagccacgtggcagaagggagcgtggagagcaccaggttctacctgtgc
cgtcgtacagtcatggaaatgctgagggaccgaggctgcaacgtctctgacttggacctc
aatctctcgctcactgagttcctctccgagttcggccccaacccggaccatgaacgcctc
agcgtctgcgtccatctacgctccaagccctccaagaagttggaaattatctcaaagaaa
aggttctttagaaccaaagatttcgtagtgattgttgtcatcttttgtggaactgacgag
ataaggaaacgcaacatgtgcggtatctatgctggcctcccgaacaaagcaagtattcac
cagctgattcttgtcttacaaagtaaaatgaactgctatgctcggaaagaacttgaaaag
tatccatttaaagttgacaccttccatatctcggacttgctggtgaatatcacaaagcat
gtttcacagccgaagcttgagatgcttactgctgaagaaaagatgaagctgctaatgaaa
tacaacttggaagacaagaagctccctctgatgctggcaactgatgcaactgcacgatac
tacggattggagaaagggcaggtggtaaaagtcaattacagcgggggatttgctggacca
cttgaaacttaccgctgcgtcgcttga

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