Malus sylvestris (European crab apple): 126629811
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Entry
126629811 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126629811
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
126629811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
msyl04131
]
126629811
Membrane trafficking [BR:
msyl04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
126629811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
Clathrin
VPS8_N
TPR_VPS8_2
Beta-prop_EML
Beta-prop_EML_2
WD40
WDR55
ANAPC4_WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_LRRK2
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
126629811
NCBI-ProteinID:
XP_050155908
LinkDB
All DBs
Position
7:23196019..23206142
Genome browser
AA seq
1931 aa
AA seq
DB search
MTKKLTRFEPQLAMELDLDSFLNSHLSLSDEDDDDDLSSVPHRTIDEILNDTDSSASSSP
PSSTIYRLNSDPKPPEPPNDAVSVPVVKSEDERVVRPRSNLYSRVKSVDLSEDPAGRVPK
PSPWLLGGMRTNAKPGAALAAAAAASRSMPTPHAAAIKSRRSAVSGVIQKVLEGSELDEK
SEVSSNSTGDTTAIRSEVLRTNSNELQVDFGGELLREGGVLESESKLEQTFRVDRSQVDE
ASAGNAVEEEKNVSSFDENLTNLDANDVKDTEFSKNVEVVEEYKQDIRDLDDNSPCSKES
DSEDNDGGGGGKDDGDDGGGKESEDNKGDIGNDSDIGDDDELGSSITQLVEERIGELESR
RISKKYEKKLRKPLEIAEELEKKQASNALHWEEGAAAQPMRLEGVRRGSTTLGYFNVDAN
NPITRTLSSPALRRDHGSPQVLAVHNNYIAIGMGRGSILVIPSKYSAHTADSMDAKMLIL
GLQGERSYAAVTSMCFNQQGDLLLAGYADGHITVWDVQRASAAKIITGEHTAPVVHTLFL
GQDSQVTRQFKAVTGDSKGLVLLHSSSVVPLLNRFSIKTQCLLDGQNTGTVLSASPLLFD
EFCGGASLSSQGSGAVSGSSIGGMMGGVVGGDAGWKLFNEGSSLVEEGVVVFVTHHTVLV
VRLTPTLEVYARLSKPDGVREGSMPCTAWKCTIQSHSSPASSENMPAEAVERVSLLALAW
DRKVLVAKLVKSELKVYGKWSLESAAIGVAWLDDQMLVVLTVTGQLCLFAKDGTVIHQTS
FSVDGFGGDDLIAYHTHFINIFGNPEKAYHNCVAVRGASVYVLGPMHLIVSRLLPWKERI
QVLRGAGDWMGALNMAMTIYDGQAHGVVDLPRTLVAVQETIMSYLVELLLSYVEEVFSYI
SVAFCNQIGKRDQADDINSKSSSMHSEIKEQYTRVGGVAVEFCVHIKRTDILFDEIFSKF
VAVQQRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSRTGWLQRVEQCVLHMDISSLDF
NQVVRLCREHGLYSALVYLFNKGLDDFRSPLEELLVVLRNSQREGATALGYRMLVYLKYC
FSGLAFPPGQGTIPPSRLPSLRTELLQFLLEGSDAPNSRSVSSVMPGGEYINLYLLLELD
TEATLDVLRCAFVEDEISKSDLSSHDSDMQDGNNLMAQNKNSMVQNTVDTLIRIISKDSS
QTDGSPSNDDTGSVVVWPSKKDIDHLFEFIAYYVACGRATVSKSVLSQILEYLTSDNNFP
PCVSRDSITSKRREKQVLGLLEVVPETDWDSSYVLQLCEKAQFYQVCGLIHTSRHQYLAA
LDCYMKDVEEPIHAFSFINKTLLQLTDKECAAFRSEIISRIPELFYLNREGTFFLVIDHF
TIEEGSHILSKLRSHPKSLFLYLKTVIEVHLSGTLDFSSLRKDDLVRVKDQSKAVEAYLE
RISDFPKLLRSNPVNVTDDMIELYLELLCQYERNSVLKFLETFDSYRVEHCLRLCQKYGI
TDAASFLLERVGDVGSALLLTLSTLSDKFMKLDTAVASLASSNSARTEHFSNALKLEEVN
DINSILHACIGLCQRNTHRLNPDESEALWFRLLDSFCEPLTDSFDAGTVSKGEDVKTTVA
KSLDSEEDEMAFIIKWRISKLHKGFHILRKLFSRFIKEIVEGMIGYVRLPTIMSKLLSDN
GNQEFGDFKFTILGMLSTYGFERRILDTAKSLIEDDTFYTMSILKKGASHGYAPRSQICC
LCDCLLDKNSSSYIRIFNCGHATHLQCEALENGASSSSSSSGCPVCMPKKKSQRSRSKSV
LPEKSLVKEFLSRTQQTHGTTSHPHESSASENTYGLQQISRFDILTNLQRDRGLVEIENM
PQLRLAPPAVYHEKVQKGTVLSPAESSTDLSRVGQQSKTKQLRDLKVRGSSLRLPLKSNI
FGNGKEKTSKR
NT seq
5796 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagaagctcactcgcttcgaaccgcaactcgccatggaactcgaccttgactcg
ttcctcaattcgcacctctccctctccgacgaagacgacgacgacgaccttagctccgtc
ccccaccgcacgattgacgaaattctcaacgacaccgattcgtccgcctcatcgtccccg
ccctcctccactatctaccgcctcaattccgatcccaaaccaccggaacctcccaacgac
gccgtatcggtccccgtcgttaagtccgaggatgaaagggtggtccggccgaggtccaat
ctgtacagtcgggtcaagtccgtggatttatcggaggatccggccgggagggttccgaag
ccgtctccatggttgctcggaggcatgagaacgaatgcgaagcccggggcggccctggct
gcggctgcggcggcctcaaggtcgatgccaacgccgcacgccgcggcaatcaagtcgagg
aggagcgccgtgagcggagttatccagaaggttcttgaaggttcagaactggatgaaaaa
tccgaggtgagttccaattctactggtgatacgactgcaattcgttcggaagtgcttagg
acaaattcaaatgaattacaagtggattttgggggtgaattgttgagagaaggcggggtt
ttggagagcgaaagcaagttagagcagacttttcgagttgatcgatctcaagttgatgag
gcgagtgctggtaatgctgtggaagaagagaagaatgtaagtagttttgatgagaatttg
acaaatttagacgcaaatgatgttaaagatacggaatttagtaagaatgttgaggtcgta
gaggaatataaacaagatattcgagacttagatgataacagtccttgttcgaaagagagt
gatagcgaggataatgatggtggcggtggtggcaaggatgatggtgatgatggtggtggt
aaggagtccgaggataacaaaggcgatattggtaacgatagcgatattggtgatgacgat
gaattgggaagttcaatcactcaactcgtggaggagagaattggggaattagagagcagg
aggattagtaaaaaatatgaaaagaagttgcgcaagccacttgaaatcgctgaagagcta
gagaagaagcaagcttctaatgctttgcattgggaagagggtgccgctgctcaacccatg
aggcttgagggtgttcggagaggctccaccacattaggatacttcaatgttgatgctaac
aatcccattactcggaccctttcatctccggcgttaaggcgtgatcatggctcaccgcaa
gtcttggcggttcacaataattacattgcaataggaatgggaagagggtctattcttgtt
attcctagcaagtactctgctcatactgctgatagcatggatgcaaagatgctaattctt
gggttgcaaggagaacggtcttatgctgctgtaacttctatgtgcttcaatcagcaaggg
gacttgctcttagctggttatgctgatggtcacattacagtttgggacgtgcagagggca
tcggctgccaaaataattaccggagaacatacagctccagttgtacatacgttgtttttg
gggcaggattctcaggttacacgtcaatttaaggcagttaccggtgatagtaagggtctg
gtattattacattcttcctcagtggttccccttcttaataggttctcgattaaaacacag
tgccttcttgatggacaaaatacaggcacagtgctgtcagcttcaccactcctgtttgat
gaattctgtggaggggcttcactgtcttctcagggaagtggggcggtttcaggcagcagt
attggtggtatgatggggggtgtggttggtggagatgcaggttggaaactcttcaatgag
ggatcttctttggtcgaagaaggtgtggtcgtgtttgtcacccatcacactgttctggtg
gtaagactaactcccactttggaagtgtatgcacgactttccaaaccagatggggttcgg
gagggttctatgccttgtactgcttggaaatgtacaatacaatcacacagttcacctgct
agtagcgaaaatatgcctgctgaagcagttgaaagagtttcgttacttgcacttgcttgg
gatcgaaaagttctggtggcaaagttggtcaaatcagagctgaaagtatatgggaaatgg
tctcttgaaagtgcagccataggtgtggcttggctagatgatcagatgctggtggttctc
acggtgaccggacaactttgtttgtttgcgaaggatggaactgtgattcaccaaacaagt
ttttctgttgatggttttggaggcgatgatctcattgcttatcatactcacttcattaat
atatttggaaatcctgaaaaagcttatcacaattgtgtagctgtaagaggagcttcagta
tatgtactcggaccgatgcatcttattgtttcccgacttctcccatggaaagaacgaatt
caggttttacggggagcaggtgattggatgggtgccttgaacatggcaatgacaatttat
gatggtcaagctcatggtgttgttgaccttcctagaactctggttgctgtacaggagacc
ataatgtcctacctggttgagttgctattgtcatatgtagaggaagtattttcatatatc
tcagtagcgttctgcaaccaaattggaaaaagggatcaagctgatgacataaacagcaaa
agcagttctatgcactctgaaataaaagagcaatacacccgtgttggtggagttgcagtt
gaattctgtgtccatatcaaaaggactgacatactttttgatgaaatattctccaagttc
gtagctgttcaacagagagacacatttttggagctgttggagccttatatattgaaggac
atgcttggttctcttccacctgagattatgcaagcactggtagagcactacagccgcaca
gggtggttacagcgcgttgaacaatgtgtccttcacatggatatttcgtccttggatttc
aatcaggttgttaggttatgcagggagcacgggctgtatagtgctctggtgtatctcttc
aataaaggattggatgatttcaggtcacccttagaggagcttttggtggtcttgcgaaat
agtcaaagagaaggtgctactgcccttggttacaggatgctggtttatttaaagtactgc
ttttcaggccttgcttttccaccaggacagggaacaattcccccctcacgcttgccatct
ctgagaacagaacttctgcaatttttgttggagggttctgatgcccctaattcaagatca
gtctcaagtgtaatgccaggaggagaatatattaacctgtatcttctgttagagctagat
actgaagctactttggacgttctgagatgtgctttcgtggaagatgaaatctcaaaatct
gacctttcttctcatgattcagatatgcaggatgggaacaatttaatggctcaaaataaa
aattcaatggttcagaacacagtagatactcttattcgcattattagtaaggacagttct
caaacagatggatctcctagcaatgatgacactggatcagtagtagtgtggccttcaaag
aaagacatagatcatctatttgagtttattgcatactatgttgcatgtggaagagccact
gtctcgaaaagtgtattgtctcagattttggagtatttgacctcagataataactttcca
ccatgtgtttccagagatagcataacttcaaaaagaagagaaaagcaggttctgggactt
cttgaggtagtgcctgagaccgattgggattcatcttatgtgttacagctatgcgagaaa
gcgcaattttaccaggtttgtggcctaattcatactagcagacatcagtatcttgctgct
ctggattgctacatgaaagatgtagaagaacccattcatgccttctcctttatcaacaaa
acattattacagctgactgacaaggaatgcgctgcttttcgatcagaaattatttctcga
attccagagcttttttacttaaacagagagggcacattcttcttggttatcgatcatttt
actattgaagaaggttctcatatcctctctaaacttcgttcccatccaaaaagtctgttc
ctttacttaaaaacagtgattgaggtccacttatccggcacgctcgacttctcaagttta
agaaaagatgatcttgtgagggttaaggatcaatcgaaagcagttgaggcgtatctggaa
aggatctccgatttcccaaagcttttgcgtagtaatcctgttaatgtgactgatgatatg
attgaactttatctggagctgttatgtcagtacgagcgcaattcagttctcaaattctta
gagacattcgatagctatcgcgtggaacactgtttacgcctgtgccagaaatatgggata
acagatgctgcttctttcttgttggaaagggttggtgatgtcggcagtgctcttttactg
acactttccaccctcagtgacaaatttatgaagcttgatactgctgtggcaagtctggcg
tcaagtaattctgctcgtactgagcatttcagcaatgctttaaaattggaagaggtgaac
gacattaacagcattttgcatgcctgtattgggctgtgccaaaggaacacccatcgctta
aatcctgatgaatcagaggcgctctggtttagattacttgactcgttttgtgagccttta
acagattcatttgatgctggaacggtatctaaaggagaagatgttaaaacgacggtggcc
aagtcgttggactcagaagaggatgagatggcttttataatcaagtggagaatctcaaag
ctccataaaggctttcatatcttaagaaagctgttctctcggttcatcaaggagattgtt
gagggcatgataggatatgttcgccttccgactatcatgtccaaactcctctctgataat
ggcaaccaagaatttggtgattttaaattcacaattttggggatgcttagcacatatggc
ttcgaaagaagaattctggatactgccaagtccctgatagaagatgatacattctacact
atgagcatactcaagaaaggggcctcccatgggtatgcccctcggagtcaaatatgttgt
ttatgtgattgtcttcttgacaagaactcttctagctacattcgcattttcaattgcggt
catgcaacgcatcttcaatgtgaagctttagagaatggcgcatcaagtagtagctcatcc
tctggatgccctgtttgtatgcctaagaagaagtctcagaggtctagaagcaaatcggtc
cttccagagaagagtttggtgaaggagtttttgtcaagaacccaacaaacacacggaaca
acttcccacccacacgaaagcagtgcatcagagaatacgtacgggcttcagcaaatatca
cggtttgatatcttgaccaatttgcaaagagaccgaggattagtcgagattgaaaacatg
cctcaactaaggctcgcacctccggctgtatatcatgagaaggttcagaaaggaactgtt
ctttcaccggcggaaagcagcactgatctttcgagagtagggcaacaaagtaaaaccaag
caactcagggacctaaaagtaagggggtcgtctctccggttacccttaaaatcaaacatc
tttggtaatggcaaggagaagaccagcaagcgatga
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