Malus sylvestris (European crab apple): 126629835
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Entry
126629835 CDS
T09027
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 1-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
msyl03036
]
126629835
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
126629835
microRNA pathway
RISC loading complex
126629835
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
dsrm
DND1_DSRM
DEAD
Helicase_C
ResIII
Dicer_dsRBD
Dicer_PBD
SNF2-rel_dom
Cas3-like_C_2
Piwi
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
126629835
NCBI-ProteinID:
XP_050155929
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All DBs
Position
7:complement(23571596..23587031)
Genome browser
AA seq
1967 aa
AA seq
DB search
MEEARVSGDTGNGAPTEGAVRPSYWLDACEDIPCGDFVEFCEPPVCGPPPVVVAAIGNGC
NQEEDGLVGGFFGGIDHFLDSIKSGAGLPGVTDPNLDVNANGVIGNAAVDGCAKIEPPVV
VQRENVDDSVGHNVRRGGRNLEGDNGEGKGDWSGYHTYGKRRGNGVVRERDMDGEERFSK
RVALDNGRNGRYSSGRGQYNMRDKSFSRKRPRDSEDIDRRDRDREDRDRIRRRENYGSYN
RREGGRDREAKGYWERDKLGTDELVFQLGCYEPDHNKEGRIADVKNKECNGKADKKPEEV
KEKTPEEQVRKYQLDVLEQAKKRNTIAFLETGAGKTLIAVLLMQSVCNDMQQKQNKKMLS
VFLVPKVPLVYQQAEVIRERTGFQVGHYCGEMGQDFWDTRRWQHEFDTKQVLVMTAQILL
NILRHSIIKMESINLLILDECHHAAKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLK
GVSNQIDCAIKICNLESKLDSIVCTIKDRKELEKHVPMPSETVVKYDKGASLWSFHEQLK
KMEAEVEEAAKFSSRKSKWQFMGARDAGAKEELRQVYGVSERTESDGAVNLIQKLRAINY
ALGELGQWCAYKVAQSFLTALQNDERVNYQLDVKFQESYLSKVVNLLQCQLXEGAVLDME
KKVADSENGVSCDGNDPDEMEEGELPDTHVASGGEHVDVIIGAAVADGKVTPKVQSLVKT
LLKYQHTEDFRAIVFVERVVSALVLPKVFAELPSLGFIKCASLIGHNYSQEMRSCQMQDT
IAKFKDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMV
ERGNLAHEAFLRNARNSEETLRKEAIERTDLSHLKDSARLISADTMPETVHQVESTGAVV
SLNSAVGLIHFYCSQLPSDRYSILRPEFVMVRHEKQGGHTEYSRKLQLPCNAPFETLEGP
VSSSMHLAQQAVCLAACKKLHEMGAFTDMLLPDKGVGEEKEQVDQNDGGDPLPGTARHRE
FYPEGVADILKGEWILSGRDLGCDLELIHVYMYGVKCVNSGSSKDPFLTQVSDFAVLVGN
ELDAEVLSMSVDLFIARTMTIDASLVFRGSICITESQLASLKSFHVRLMSIVLDVDVEPS
TTPWDHAKAYLFVPVVSDKFVDPMKEIDWNLVENINGAEAWDNPLQRARPDVCLGTNERT
LGGDRREYGFAKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLIPDRNALKIRKLVDFP
KDKLFMADTTCVSVKGLVGKIVTAAHSGKRFYVDSICYDMTAENSFPRKEGYLGPVEYSS
YADYYKQKYGVELVYKQQPLIRGRGVSYCKNLFSPRFEHAEEQDGESEEILDKTYYVFLP
PELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVELKDMINYPVPASKILEALTAASCQE
TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALKQGLQSY
IQSDRFSPSRWAAPGVLPFFDEYTNDGESSLFDEDNPVGKMDRTGDVYEDDELEDGELEG
DSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMNWIGIEIELDPDGLECIPKPSSV
PESVLRSVNFDALEGALNFKFNDRFFLIEAISHASRPSAGVSCYQRLEFVGDAVLDHLIT
RHLFFTYTNLPPGRLTDLRAAAVNNEKFARVAVKHNLHVHLRHGSSALEKQINDFVKEVG
NELSKPGFNSFGLGDCKAPKVLGDIFESIAGAIFLDSGHNTAAVWKVFQPLLQPMVTPET
LPMHPVRELQERCQQQAEGLEYKATRSGNVATVEVFIDGIQMAIAQNPQKKMAQKLAARN
ALAALKDKETAETKGKEENGKKKKGSQTFTRQTLNDICLRKNWPMPSYRCVNEGGPAHAK
KFTFAVHVNTSDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS
NT seq
5904 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggctagggtttcaggggacactgggaatggtgctcccactgagggggcggtt
cggccctcgtactggttggatgcttgtgaggacataccgtgtggtgatttcgtggagttc
tgtgaacctccagtttgtggtcctcctcctgtggtggtggcggctattggcaatggctgc
aaccaggaggaggatgggttggtgggcggttttttcggggggattgatcactttctcgac
agtattaagagcggagctggcctccctggtgtgactgatccgaacttggatgtgaatgcc
aacggtgttattggcaatgctgctgttgatggttgtgctaagattgagccacctgtggtt
gtgcagagggagaatgttgatgactcggttggacacaatgttcggagaggagggaggaat
ttggagggtgataatggagagggtaagggtgattggagtggttatcacacgtatgggaag
aggaggggcaatggggttgtgagggagagagatatggatggtgaggagaggttctctaag
agggttgctttggataatggtaggaatgggaggtatagttccggtagagggcaatataac
atgagggacaaaagttttagcaggaagaggcctcgtgattccgaggatattgatcggagg
gatagagatagagaagatagagatcggattaggagaagagagaattatggtagttataat
aggagggagggtggtagagatagggaggcaaagggttattgggagagggataagttgggc
accgatgagcttgttttccaattaggatgttacgaacctgatcataacaaagagggtagg
atagccgatgtcaaaaacaaagaatgcaatgggaaggctgacaagaaacctgaagaggtt
aaagaaaaaactcccgaggaacaagtcaggaagtatcaattggatgtgctggaacaggca
aagaagagaaatacaatagcttttcttgaaactggggccggaaagacactcattgccgtt
ctcctcatgcaaagtgtttgcaatgatatgcaacaaaagcagaacaaaaagatgctctct
gtatttctcgttcctaaagttccccttgtttatcagcaagcagaagttattcgtgagcga
actggtttccaagtgggccattattgtggtgagatgggccaagatttctgggacacccga
agatggcagcatgaattcgacacaaaacaggttctggtaatgacagctcaaattctgttg
aacattctgaggcacagcatcataaaaatggaatcaatcaatctcttgattctggatgag
tgtcatcacgctgcgaagaaacatccatattctttagtgatgtctgaattttatcataca
accccaaaggagaaaagaccgtctgtatttggaatgactgcttctcctgttaatttaaaa
ggtgtttccaaccaaatagattgtgcaataaagatttgtaatcttgaaagtaaactagat
tccatagtttgtaccataaaggaccgcaaggagcttgaaaagcatgttccaatgccctcc
gaaacagtggtgaagtatgataaaggagctagcttatggtcctttcatgagcagctaaaa
aaaatggaagcggaagttgaagaagctgcaaagttcagctctaggaaaagtaaatggcag
tttatgggagccagagatgctggggccaaggaagagctgcgccaagtgtatggtgtttcg
gaaagaacagaaagtgatggggctgttaacttaattcaaaagttgagggctattaattat
gcgctcggtgaactgggtcagtggtgtgcttacaaggttgcacaatctttcttgacagct
ttacagaatgacgagagggtgaactaccagcttgatgtcaagtttcaggaatcctacctg
agcaaagttgtaaatctcttacaatgtcaactataagagggagctgttttagacatggaa
aagaaagtagcagattcagagaatggtgtttcttgtgatggaaatgatcctgatgagatg
gaggaaggagagctaccggatactcatgttgcctctggtggggagcatgtagatgtgata
ataggagctgctgtagctgatgggaaggtgactccaaaagtgcagtcactggtaaaaaca
cttctcaagtatcagcatacggaagattttcgcgcaatcgtctttgttgagcgagttgtg
tctgctttagtccttcccaaggtcttcgcggaacttccttctttaggttttataaagtgt
gctagccttatcggccacaactatagtcaggaaatgagaagctgccaaatgcaggacact
attgccaaattcaaggatggccgtgtaacattgttagttgcgactagtgttgccgaggaa
ggacttgatatacggcagtgcaatgttgttattcggttcgacctcgcaaaaactgttttg
gcttacattcagtccaggggtcgtgctagaaaacccgggtctgattacatcttgatggtg
gagagaggaaatctggcacatgaagcattcttaaggaatgccaggaatagtgaggagact
ttacggaaggaagcaatagagagaactgatctgagtcatctgaaagatagtgctaggtta
atttcagcggatacaatgccagagacagtgcaccaggtggagtcaactggtgctgttgtg
agcttaaattctgctgttggactcatccatttctactgctctcagcttcccagcgacagg
tactcaattcttcgtcctgagtttgttatggtgaggcatgagaagcaaggaggtcacact
gaatattcacgcaaacttcaactcccttgtaacgcaccatttgagacacttgagggtcct
gtgtccagttcaatgcaccttgcacagcaggctgtttgcttggctgcttgcaagaaactc
catgagatgggagcatttactgacatgctcttgccggacaagggagttggggaagaaaaa
gagcaggttgaccagaatgatggcggagatccacttcctggaactgccaggcacagagag
ttctatcccgaaggtgtagctgatatccttaagggagaatggatcttatccggaagagat
ttgggctgtgacttggaattaattcatgtttacatgtatggcgtgaaatgtgtaaactct
ggctcttcaaaagatcctttcttgactcaagtttcggacttcgcagttctagtaggaaat
gaactggatgcagaggtgttatcgatgtcggtggatctatttatcgctcgaaccatgacc
atagatgcatcccttgttttcaggggttcaatatgtattactgaaagtcagttggcatcc
cttaaaagttttcatgtaagattaatgagtattgtactggacgtggatgttgaaccttcc
accactccttgggaccatgcaaaggcttatttatttgtccctgtggttagcgataagttt
gtagatcctatgaaagaaatagattggaatctggttgaaaatataaatggtgcagaggct
tgggacaatccccttcaaagagctcgacctgatgtttgccttggcacaaatgagcgtacg
ctaggtggagacagaagggagtatggttttgcaaaattgcgtcatggcatggcttttgga
caaaaatcccatccaacctatggtatcagaggagccgtggcacagtttgatgttgttaaa
gcttctggattgattcctgatcggaatgccctaaaaattagaaagctggtggattttccc
aaagacaagttatttatggcagatactacatgtgtcagtgtaaaaggcttggtcgggaag
attgtgacagctgctcactcagggaagaggttttatgtggattcaatatgctatgatatg
acggcagaaaactctttcccccggaaagaaggctaccttggccctgtggagtacagctca
tatgctgattattacaagcaaaagtatggagttgagttggtctataagcaacaacctctt
ataagagggcgtggtgtctcatattgcaagaatctcttctccccgcgatttgaacacgca
gaagaacaagatggtgaatctgaagaaattcttgacaaaacgtactatgttttcctccct
cctgagctgtgtttagtacacccattgcctggatcacttgtccgtggtgcccagagacta
ccatcaataatgagaagggttgaaagcatgctgcttgcagtcgaacttaaagatatgata
aactatcctgtccctgcttcaaagatcttggaagccctgacagctgcttcgtgccaggag
acattttgctacgaaagagcagagcttctgggtgatgcttacctgaaatgggttgttagt
cgatttctatttcttaaataccctcagaaacacgagggtcagcttactaggatgaggcaa
caaatggttagcaacatggttttgtaccagtatgcattgaaacaaggacttcagtcatat
attcaatcagatcgcttttctccatctcggtgggctgctcctggggtgttacccttcttt
gatgagtatacaaatgacggagaatcatccttgtttgacgaggataatcctgtagggaaa
atggatcgcactggtgatgtatatgaggatgatgagctggaggacggggagcttgaaggt
gattcgagttcttatagagtcctctctagcaagacccttgcagatgttgtcgaagcactt
atcggggtttattatgttgaaggtgggaaaaatgctgctaaccatctcatgaactggatt
ggaattgagatagagcttgatcctgatgggctagagtgcataccgaagccatctagtgtt
ccagagagtgtacttaggagtgtcaactttgatgccttagaaggtgctttgaattttaaa
tttaatgataggttctttttgatagaagccattagtcatgcttctcgaccatctgctgga
gtatcctgttatcagcggctggagtttgttggtgatgccgtcttagatcatctcattaca
aggcacttgttcttcacctacacaaatctacctccaggcaggttgactgacctgcgagct
gctgctgttaacaatgaaaaatttgcacgtgttgctgtgaaacataatctccatgtgcac
cttcggcatgggtcgagtgcccttgaaaaacagattaatgactttgtgaaagaagtcgga
aatgaattatcaaagccagggttcaactcctttggtttgggagattgcaaagctccaaag
gttcttggtgacatttttgaatctattgcaggtgccatttttctcgacagtggacataat
actgcagctgtttggaaggtctttcaacctctgttgcaaccaatggttactccagagaca
ctgccaatgcatcctgtgcgtgagctgcaagaaagatgccagcaacaggctgaaggcttg
gaatacaaagccactcgaagtggaaatgtggctacagtcgaagtcttcattgatggcatc
cagatggcaattgctcagaatccgcaaaagaagatggcacagaaactggctgctaggaat
gcacttgctgcattgaaagataaggaaacagctgaaactaaagggaaggaagagaatggg
aagaagaagaagggtagtcaaacatttacccgacaaaccttgaatgacatatgcttgcgt
aaaaattggcccatgccatcctaccggtgtgtaaatgagggtggccctgcacatgcaaag
aagttcacatttgccgtacatgtgaatacctcagacaggggatggacagacgaatgcgtc
ggggagcctatgcccagtgttaagaaggccaaggactcggcagcagttcttcttttggaa
cttttaaataagttatactcatga
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