Malus sylvestris (European crab apple): 126630598
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Entry
126630598 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7-like isoform X1
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msyl03009
]
126630598
03036 Chromosome and associated proteins [BR:
msyl03036
]
126630598
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126630598
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
Pre-60S particles
Helicases
126630598
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
126630598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
YgbB
FlpD
CMS1
Motif
Other DBs
NCBI-GeneID:
126630598
NCBI-ProteinID:
XP_050156699
LinkDB
All DBs
Position
7:31893320..31922010
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AA seq
683 aa
AA seq
DB search
MPSMDVSDYLLAGTTPKDKKEKKKKLKSETLDDAADSPTTEKKSKKESKHKKRKASDDED
RSETSSEMGEPVNVKPPKSEEKSKKKSKKAKVEPEEEEEKPKEDPNAVSKFRISAPLRAK
LKENGIESLFPIQAMTFDTILDGLDLVGRARTGQGKTLAFVLPVLESLTNGPAKAFRKTG
YGRPPTVIVLLPTRELAKQVFADFEAYGGAVGLAACCVYGGSPYGAQESKLRRGVDIVIG
TPGRIKDHIERGNIDLSTLKVRILDEADEMLRMGFVDDVELILGKVKDVSKVQTLLFSAT
LPSWVKGISSRFLKPDKKTVDLVGNEKMKASTNVRHIVLPCSSSARSQLIPDIIRCYSSG
GRTIIFTETKEAASGLAEALPGARALHGDIQQGQREVTLAGFRSGKFLTLVATNVAARGL
DINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNSGVAVMLYDPRRSNFSKIERESGVKFEH
ISAPQPLDIAKAVGQDAAEMITKISDSVIPAFKSVAEELLNTSGLSAVDLLAKALAKAAG
YTEIKKRSLLSSMENHVTVLLEAGKPVYSPSFAFGVLRRFLPEEKVESVKGMALTADGNG
AVFDVAAEDLDLFLAGQENAANVSITVLKSLPDLQEKESRNTRFGGGGRFGRGGGGGFRN
DRYSNNRSGGGGGGGGRGRGNRW
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgatggacgtgtccgattatctactcgcgggaaccactccgaaggacaagaag
gagaagaagaagaaattgaaaagcgaaaccctagacgacgccgccgactcgcccactact
gagaagaagtcgaagaaggagtctaagcacaaaaagcggaaggcttcggatgacgaggac
aggagcgagacgagctccgagatgggcgagcccgtgaatgtgaagccgccgaagagcgaa
gagaagagcaagaagaagtcgaagaaggcgaaggtggagccggaggaggaggaggagaag
cccaaagaggatcctaatgcggtgtcaaagtttcggatttcggcgccgttgagggccaaa
ttgaaggagaatgggatcgaatccttgttccctattcaggccatgacattcgataccatt
ttggatggattggatttggtcggtcgggctcgaactggacagggtaaaactctagctttt
gtgttacccgttttggagtccttaacaaatgggcctgcaaaagcatttagaaagactggt
tatggtaggcctccaactgttatcgtgcttttacccactcgggaacttgccaaacaggtt
ttcgccgattttgaagcttatggtggtgctgtggggctagcagcatgttgtgtatatggt
ggatctccttacggggctcaagaaagtaagttaaggagaggggtggatattgttattgga
acgcctggccgtataaaggatcatatagagaggggcaatatcgacttgagtaccttgaaa
gttaggatccttgacgaagctgatgaaatgctgaggatgggctttgttgacgatgttgaa
ctcattctaggcaaggtgaaggatgtaagtaaagttcaaacactactttttagtgcaacc
ttgccaagttgggtgaaaggcatttcttctaggtttctcaaacctgataagaaaactgta
gatcttgttggtaatgaaaaaatgaaggccagcaccaatgttaggcatattgttcttcct
tgctccagttcagcaagatcacaacttattcctgatatcatacgttgttatagtagtgga
ggacgcacaatcatttttaccgagacaaaggaagctgcttctggacttgctgaggcattg
cctggagcccgagctttgcatggggacatacagcagggccaacgtgaggtcacacttgct
ggtttcagatctggcaagtttttgacattagttgccacaaatgtggcagcgcgtggactg
gatatcaatgatgttcaattaattatccagtgtgaacccccacgtgatgtagaagactat
atccatcgatctggacgcacagggagagcaggcaattccggagttgctgtcatgctttat
gatccaagaagatcaaatttttcaaaaatcgagagggagtccggggtgaaatttgaacac
atttctgctcctcagccacttgatatagctaaagcagtaggtcaagatgcagcagaaatg
ataaccaaaatttctgatagtgtaattcctgctttcaagtctgttgccgaggagctactt
aacacctctggcctatctgcagtagatctactggcaaaagcacttgctaaagctgctggc
tacaccgagataaagaagagatcacttcttagctctatggagaaccatgtgacagtactt
ctcgaggctggaaagcccgtttattcaccgtcttttgcttttggggtcttgaggagattc
ttgcccgaggagaaggttgagtcagtgaagggtatggcactaactgccgatggaaatggt
gcagtttttgatgtggcagctgaagatttggatttgtttcttgctggtcaggaaaatgca
gctaatgtgagcataacggtgttgaaatcactgcctgatttacaagaaaaagaatcaagg
aatacaagatttggcggtggtggaaggtttggccgtggtggtggtggaggttttcgaaat
gataggtattccaacaaccgatccggtggtggtggtggtggtggtgggagaggtcgcggc
aacagatggtga
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