Malus sylvestris (European crab apple): 126630747
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Entry
126630747 CDS
T09027
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03013
Nucleocytoplasmic transport
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126630747
03015 mRNA surveillance pathway
126630747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126630747
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126630747
mRNA cycle factors
P-body specific factors
126630747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Glycos_transf_N
Motif
Other DBs
NCBI-GeneID:
126630747
NCBI-ProteinID:
XP_050156867
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All DBs
Position
7:complement(25981486..25992966)
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AA seq
1185 aa
AA seq
DB search
MDHHEEECRAGNEPHGKQDDEEAAARLEEIKKSIEGKMALRQSNLNPERPDTGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMDDLRVVNLSKFVSEAVTAICDAKLRSSDIQAAVQIC
SLLHQRYKDFSPTLLQGLLKVFFPGKSGDDLEADKNLRAMKKRSTLKLLLELFFVGVIED
GGIFVNIIKDLASGEHLKDRDTTQTNLTLLASFARQGRMFLGLPLAGPEIHEEFFKGLNI
TTDQKKFFRKAFQTYYAAAAELLQSEHTSLRQMEHENAKILNAKGELSDESVSSYEKLRK
SYEHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEDASSPVAGKDSSALEAIWDDEDTR
AFYECLPDLRAFVPAVLLGEAESKSSDQSAKTQEQPTEPALESDQTQRITEDTGEASADV
GALQEAKSTEKGKDKEEKDKDKIKDPDKEKVDRKGENDKEKLKSIEGTNLDALLQRLPGC
VSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLAYYSRLIATLSTCMKDVSSM
LLAMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFSHHN
IDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPE
RSARVTKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWGECEPYLLKCFLKVHKGKY
GQIHLIASLTAGLSRYHDEFAVSVVDEVLEEIRLGLELNEYGMQQRRIAHMRFLGELYNY
EHVDSSVIFETLYLVLAFGHGTPEQDVLDPPEDCFRMRMVITLLETCGHYFDRGSSKRKL
DRFLMNFQRYILSKGVLPLDVEFDLQDLFADLRPNMARYSSIEEVNAALVELEERDRTVS
IEKHSDTEKPSRRNTSDEMSANGKSIVNGTGENGVVHGNLGDSDSDSGSGTIDRDRHNEE
GLGEENHDGGSDSDEDDDDGGGPASDEDDEVHVRQKVAEVDPQEAEKFELDLKAVMQESM
EQRRLELRGRPTLNMMIPMNVFEGSTKDHHGRGVGGESGDEALDEESGGSKEVQVKVLVK
RGNKQQTKQMYIPRDCSLIQSTKQKEAEELEEKQDIKRLVLEYNDREEEELNGLGNQTLN
HMQSGGNRLAGRGSTWEGASGRGGGARHRYHSSYSGGGAYYSRKK
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccatgaggaggaatgccgtgctggcaatgaacctcatgggaagcaagatgat
gaggaagctgctgctcggcttgaggaaatcaagaagtctattgagggaaagatggctctt
cgtcaaagcaatctgaaccccgagcggcctgacacaggattccttaggacactggattct
agcattaagcgcaacacagcggttattaaaaaactgaagcagataaatgaagagcagcgg
gaagggttgatggatgacttgagagttgtcaacctgagcaaatttgtcagtgaagctgtt
actgctatttgtgatgccaagcttagatcgtcagacatacaagcagcagtccagatctgc
tctcttctccatcaaaggtacaaagacttctccccaactctgcttcaaggtcttttgaaa
gtcttctttccagggaagtctggggatgacttagaagcagacaagaacctgagggccatg
aagaagcgaagcactttgaaactccttttggaacttttctttgttggagttatagaagat
ggtggtattttcgtgaatatcataaaggatcttgccagtggagaacacttaaaggatcgg
gatactactcagacaaatttgactcttcttgctagttttgctcgtcagggaagaatgttt
cttggccttccactcgctgggccagaaattcatgaagagttttttaagggccttaatatc
acgacagatcaaaagaaattcttcaggaaggcatttcaaacatattatgctgctgctgca
gaactgctgcaatccgagcatacttcacttcgccaaatggagcatgaaaatgctaaaatc
cttaatgctaaaggagagctcagtgatgaaagtgtctcatcatacgagaagctgcggaaa
tcttatgaacatttgtaccgcaatgtctcatccttagcagaagcacttgatatgcagccc
ccagtaatgccagaggatggtcacacaacaagggttactagtggggaggatgcttcatct
cctgttgctggaaaggattcttcggcactcgaagccatatgggatgatgaagatacaagg
gctttctatgaatgcttaccagatcttagagcatttgttccggcagtattattaggagaa
gcagagtctaaaagcagtgatcaatctgcaaagacccaggaacaaccaactgaacccgca
cttgaatcagaccaaactcaacgaattacagaagatactggagaggcttctgcagatgtt
ggtgctttacaagaggccaaaagcacagagaaaggaaaggacaaggaagaaaaagataaa
gacaagatcaaagatccagacaaagagaaagttgacagaaaaggagagaacgacaaagag
aagctcaaaagtattgaagggacaaatttggatgctttactgcagaggcttcctggttgc
gtgagccgtgatcttattgatcagttgactgtggagttttgttatttaaattcaaaagca
aatcggaaaaagcttgtgagggcattatttaatgtccctagaacatcattggagctacta
gcttactactcgcgtttgattgccacactctcgacttgtatgaaggacgtctcatccatg
ctcctagcgatgttggaagaagagttcaacttcttaattaataaaaaggaccaaatgaac
attgaaacgaagattaggaacattagatttattggagaactctgcaagtttaagattgca
ccagctggtcttgtctttagttgtttgaaggcttgtttggatgatttcagtcatcataac
attgatgttgcttgcaatcttcttgagacttgtgggcgttttctgtatcggtctcctgaa
actactgtgcggatggctaacatgttggaaatattaatgcgattgaagaacgtaaaaaat
ttagaccctcggcacagcacccttgttgaaaatgcttactacctatgcaaaccacctgag
agatctgcacgggtcactaaagtccgtcctccattgcatcagtatataagaaagttgcta
ttctcagatcttgataagtctaccatagagcatgtgctcaggcaactgcgtaaattacca
tggggtgaatgtgagccgtatcttttaaaatgctttctgaaggttcacaaagggaagtat
ggtcagatccacttgattgcttctctcaccgctggtttgagccgctatcatgatgaattt
gctgtatctgttgttgacgaggttctagaggagatacggcttggcctagaattaaatgag
tatgggatgcaacaaagacggattgctcatatgcgatttttaggagagctatacaactat
gagcatgtagattcttctgttatttttgaaactctgtacttggttcttgcctttggccat
ggcacaccagagcaagatgtactggatccaccagaagattgtttccgcatgaggatggtt
attactcttcttgaaacctgcgggcactactttgaccgaggctcttccaagaggaaactt
gatcgattcttgatgaactttcagagatatatactaagtaaaggtgtactaccgcttgat
gtggaatttgacttacaggacttatttgccgatctacgccccaacatggctcggtactct
tccattgaagaagttaatgcagctcttgtagaacttgaggagcgtgatcgtaccgtctcc
attgagaagcactctgacactgaaaagccttcaaggaggaacacctccgacgaaatgtca
gcgaatggaaagagtattgtaaatggaactggggaaaatggtgtagttcatggaaacctt
ggagatagtgacagtgattcgggaagtggcaccattgatcgagatagacataatgaagaa
ggattgggtgaagagaatcatgatggtggatctgacagtgatgaggatgatgatgatggt
ggtggaccggcatccgatgaggacgatgaagttcatgtcagacagaaggttgcagaggtg
gaccctcaagaagcagaaaagtttgagctggatctcaaggctgttatgcaggaaagcatg
gagcaacgtaggctagagctgagaggccgaccaacattaaacatgatgataccgatgaat
gtgtttgaggggtccaccaaggaccatcatggacgaggggttggaggggaaagtggagat
gaggcgttggatgaagagtctggaggaagcaaggaggtccaggtgaaagttcttgtcaag
cgtggtaacaagcaacaaacaaagcagatgtacatccctcgggattgctcacttatccag
agtacgaaacagaaagaagcagaagagcttgaagagaaacaagacatcaagaggttggtt
ttggaatacaatgacagagaagaggaggagcttaatgggttggggaaccaaactctgaac
catatgcagagtggtggtaatagacttgccggccgtggcagcacttgggaaggagctagc
ggtagaggtggtggagcacgtcatagatatcacagtagttattccggtgggggagcttac
tacagcaggaaaaagtaa
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integrated database retrieval system
