KEGG   Malus sylvestris (European crab apple): 126631084
Entry
126631084         CDS       T09027                                 
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    126631084
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msyl03019]
    126631084
   03041 Spliceosome [BR:msyl03041]
    126631084
   03032 DNA replication proteins [BR:msyl03032]
    126631084
Messenger RNA biogenesis [BR:msyl03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     126631084
Spliceosome [BR:msyl03041]
 Complex A
  U1 snRNP components
   Sm proteins
    126631084
  U2 snRNP components
    126631084
 Complex B
  U1 snRNP components
    126631084
  U4/U6.U5 tri-snRNP components
    126631084
 Complex C
  U2 snRNP components
    126631084
DNA replication proteins [BR:msyl03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     126631084
SSDB
Motif
Pfam: LSM SM-ATX DUF6897
Other DBs
NCBI-GeneID: 126631084
NCBI-ProteinID: XP_050157207
LinkDB
Position
8:complement(219404..221418)
AA seq 131 aa
MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVSMRAKAQAAGRGT
AGRGVVPPARR
NT seq 396 nt   +upstreamnt  +downstreamnt
atgagcagaagtttgggaattccggtgaagcttcttcacgaggcgtcagggcacgtggtg
acggtggagctcaagagcggtgagctttacagaggaagcatggtcgagtgcgaggacaat
tggaactgtcagctcgagaacatcacctacaccgccaaggacggaaaagtttcacagctt
gagcacgtatttatccgagggagcaaagtaaggtttatggtcatacctgacatgctaaag
aatgctccaatgttcaagcgcctggatgctagaatcaagggcaagggtgcttcactagga
gtcggcagaggtagagctgtttcaatgcgagctaaggctcaagctgctggccgtgggaca
gccggtaggggtgttgtaccacctgctcggaggtaa

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