Malus sylvestris (European crab apple): 126631746
Help
Entry
126631746 CDS
T09027
Name
(RefSeq) endoribonuclease Dicer homolog 3a-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
msyl03036
]
126631746
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
126631746
microRNA pathway
RISC loading complex
126631746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
ResIII
Helicase_C
PAZ
DND1_DSRM
SWI2_SNF2
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
126631746
NCBI-ProteinID:
XP_050157839
LinkDB
All DBs
Position
8:3356657..3368352
Genome browser
AA seq
1655 aa
AA seq
DB search
MEVEESNSSPLNHAADDDQSPQSSKKFSPRRYQSEVYEVARRKNTIAVLETGSGKTMIAV
MLIRDYEGCQTINSSSGAKKLIIFLAPTVHLVHQQFKVIKESTNCSVGEYYGALGVDSWT
MERWEKEINEHDVLVMTPQILLDALRKAFLSLEVVCLMIVDECHRANGNHPYTKIMKEFY
HKSSKKPRIFGLTASPVIKKGVSSTKDCEGQLSELESTLDSQIYTIKDITEMEVCVPFAK
ETCRFYGQAWFPCSDLKEKMKASWSKVDASLSKLQESVESNVNDMEDTIKTLRKRMSKDY
TKILYCLDDLGLICTYEAVKICLENAPKCNEVIELYREGSLQCRCFLEEVFGIIKESFLH
GSENFLDFGFDYLKAVDVGYISPKLNELVQIFHSFGRSREVRCLIFVDKIITAKVIERFI
KKVTSLSHFTVSYLTGSTTSVDALAPKIQKETLELFCSGAVNLLFATDVVEEGIHVLSCS
CVVRFDLPKTVRSYVQSRGRARQDNSQFITMLERGNKKQRDQLYEIVKSECLLTDTAVKR
DPEACILKECTLEETNIYTVDSTRALVTADSSVSLIHKYCETLPRDKYFTPNPTFHFSYL
GGSYECKITLPPNAAFQTLVGPACKKSSLAKQLVCLEACKQLHQMGALNDHLLPVIDVPD
VKRKEEASGAGTTKRKELHGTTGIRMLSGTWGEKLDGAIFQAYKFDFSCNIASELYSGFV
FLIESKLADDVGNIKLDLYLLSKTVKASVSSCGEVHLDGEQMEKAKCFQEFFFNGLFGKL
YGTKSARKQRELLLEKETRKLWTPSCLYLLLPVETLNDSKDESWRINWAGINSCVSVVEF
LKRNSSLGSHQCNVDTGSSVPSRTVSSETECSSAGIVHFANCSVDVKNLEDTVVVAIHTG
RIYSVYEVMSNTSAESPFDGKKDNVPSQYTSFSEYFNKKYGIVLLYPGQPLLRLKQSHNP
HNLLVNFNGEGGNGKTLQSGVVIGKQRMYAHMPPELLVTIGVPRDVLKSCYLLPSLIHRL
ESLMLASQLREDINYHCSSFGISSSLILEALTTLRCNDDFSMERLELLGDSILKYTVSCH
LFLKYPKKHEGQLTNYRMLTICNSNLHRLGMNRKLQGYIRDGAFDPCRWVAPGQISLRPV
PCNCGVETLEVPLDSKFQTEDPKVVVGKSCDKGHRWMCSKTISDCVEALIGAYYVAGGLP
AALHVMKWLDIDVELEPSLVADAITTASLHLYTPKANEIAVLESKLHYEFSTKGLLLEAM
THASDQESGGGYCYERLEFLGDSVLDLLITRHLYHSHTDIDPGELTDLRSASVNNESFAQ
VAVRHDLQQHLQHASMLLLSQITEYVKSLSEPDNGTTLQGTKGPKALGDMVESIAGAILI
DTKLNLDEVWRIFEPLLSPIVTPDKLELPPLRELIELCDLFGYYKKEKCTNKGETVNAEL
TVQLKDVLLTGEGCDRTKKGAKGEAARRLLKKLEERGISFSKKRKLDANQVGDSSSLDIN
HKVSDQATVKDSSALMVYKRRKTTEMPLAAPPAGVSPSVIARKTSSPNNAAPVIKAINMK
KGGPRSALFALCMKQQWPKPGFKITETQSRTPFTFGESSTKYFNSFVAQVTLHIPNSGVI
ECTGDARPDKGSSEDSAAVVLFQELQRQGRVVIAG
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagaggaatccaattccagccccctcaatcatgccgccgatgatgatcagtca
ccgcagtcgtccaagaaattcagtcccagacggtatcagtcggaggtgtatgaggttgcg
cggcggaaaaacacgatagcggtgctggaaaccggttccgggaagacgatgatagctgtg
atgctcatcagagactacgaaggctgccaaactataaattcaagtagtggtgccaaaaaa
ttgattattttcttggctccaactgttcatcttgttcaccaacaatttaaggttattaaa
gaaagcacaaattgtagtgtgggagagtattatggagccttgggggtggactcgtggacc
atggagcgctgggaaaaggaaataaatgagcacgatgtgctagttatgaccccccaaatt
cttttggatgccttaagaaaggcattcttgagtttggaagtggtatgcttgatgattgtt
gatgagtgccatcgggctaatgggaaccatccatatacaaagataatgaaggaattttat
cacaagtctagtaaaaagccaaggatttttggcttgacggcatcacctgttataaaaaaa
ggtgtctcatccacaaaggattgtgagggccagttatcagaacttgaaagcactttagat
tcccagatttatactattaaggacataacagagatggaagtatgtgtcccctttgcaaaa
gaaacatgtagattttatggccaagcatggtttccgtgttcagatttgaaagaaaagatg
aaagcctcttggtccaaggttgatgcttcattgtcaaagttgcaagaatcagtagaaagt
aatgtgaatgacatggaggatacaattaagaccttgcggaaacgaatgtctaaagactac
acaaagatcttgtattgccttgatgaccttggtctcatatgtacttacgaggctgttaag
atctgtttagagaatgctccgaagtgcaatgaggtgattgaactttatagagaaggctct
ttgcagtgcagatgttttcttgaggaagtgtttggtataattaaggaatcatttctgcat
ggttctgaaaattttttggatttcgggtttgactatttgaaggcagtagatgtgggctac
atatctccaaaattaaatgaacttgttcaaatttttcattcttttggaagatctagggaa
gtacggtgcctcatatttgttgataaaatcatcacagctaaagtgattgagagattcatt
aagaaggttacctccctgtctcattttacggtttcctatttgactggaagcactacatca
gttgacgctctggcgccgaaaatacaaaaggagacattggagttattctgctctggggcg
gtcaatttattatttgctaccgatgtagttgaggagggaattcatgttctgagctgctcc
tgtgtggtacgtttcgacttgccaaagacagtgcgtagttatgtccagtcaaggggacga
gctcggcaagataactctcaattcatcacaatgctggagaggggaaacaaaaaacaaagg
gatcaactatatgagattgtcaagagtgagtgtttgctgacagatacagctgtcaaaaga
gatcctgaagcatgcattttgaaagaatgtactttggaggaaacaaatatatatactgtg
gattccaccagagcattagtcacggcagattccagtgtcagtcttatacataaatattgt
gaaacgctgcctagggataagtacttcactccaaacccaacttttcatttctcatatctt
ggagggtcttatgagtgtaagattacattgcctccaaatgcggctttccaaactttagtt
ggccctgcatgcaaaaaatcttctttagcaaagcagcttgtctgcttggaagcatgtaag
cagctacatcaaatgggtgccctgaatgaccatcttctcccagtcattgatgtgcccgat
gtgaaaagaaaagaggaagcttctggtgcaggaactactaaaaggaaggaactacatggt
acaactggcattcgtatgctatctggaacttggggggagaaacttgatggtgctattttt
caggcatataagtttgacttctcctgtaatattgccagtgaattgtattctggatttgtt
tttctcattgaatcgaagcttgctgatgatgtggggaatatcaaattggatctttacctg
ctttcgaagacagttaaggcttctgtttcttcctgtggggaggttcatttggacggggaa
cagatggaaaaagcaaagtgcttccaggaatttttctttaatggattgtttgggaaattg
tatggaaccaaatcggctagaaaacagagagaacttttactggagaaagaaacaagaaaa
ctgtggactccatcatgcttatatttgcttcttccggttgagacattgaatgattcaaaa
gatgaatcctggagaataaattgggcagggatcaactcttgtgtttctgtggtagagttc
ttaaagagaaactcgtctttgggtagtcaccagtgtaacgttgacacagggagttcagtt
ccaagtagaactgtctcatctgagactgagtgcagcagtgcggggatagttcactttgct
aattgctctgttgatgtaaaaaatctcgaagatacggtggtggtggctatccatactgga
agaatctactcagtttatgaggttatgagtaacacttcggctgagagtccttttgatgga
aagaaagacaatgtaccatcacaatatacttcattttctgagtacttcaacaaaaaatat
gggattgtgctcctatatcctggtcagcctctgttgcgactgaaacaaagtcataatccg
cacaaccttcttgtgaacttcaatggtgaaggtggtaatggtaagacgttgcaatctggc
gttgttattggaaagcagcgcatgtatgctcacatgccacctgagcttctagtcactatt
ggtgtcccaagagacgttctaaagtcatgttatttactaccatcgttgattcatcgcttg
gagtccctgatgctagccagtcaacttagagaagatattaattatcattgtagcagcttt
gggatatcaagctcattgattctagaagcacttacaacactaagatgtaatgatgatttt
tctatggagcgcctggaattgcttggtgattcaattttaaaatataccgtgagctgccac
ctctttctcaaatatcccaaaaagcatgaaggacagttaactaactatcgcatgctgact
atttgtaactcaaacctacatagattgggaatgaatcgcaagttacagggatatatccgt
gatggtgcatttgacccatgtcgttgggttgctccagggcagatttctctacgacctgtt
ccttgtaattgtggagtggagactttagaagtaccattagatagcaaattccaaacagaa
gacccgaaagttgtggttggaaagagctgtgataagggccatagatggatgtgttcaaaa
acaatctctgattgtgttgaagcccttataggagcatactatgttgctggtggattgcct
gctgccttgcatgtgatgaagtggctcgatattgatgtagaacttgaaccttccttggtt
gctgatgcaattactacggcatctcttcatttgtacaccccgaaagctaatgagattgca
gtcttggagtcaaagcttcactatgaattttctaccaagggtctgttactggaggccatg
acacatgcatctgaccaagaatcaggaggtggctactgttatgagcgacttgaatttcta
ggcgactctgtgttggacctgcttatcacaaggcatctctatcatagccacacagatatt
gatccaggcgagttaactgacttgcgctcagcttctgttaataatgaaagttttgcgcaa
gttgctgttagacatgacctccagcagcatctgcaacatgcatcgatgttacttctaagt
cagataacagaatatgtgaagtctctttcagaacctgacaatggtaccacacttcaaggc
accaaaggtcctaaggctctcggagacatggtggaaagtattgcaggggctattctaatt
gataccaaacttaatcttgatgaagtgtggagaatttttgagccactattatctccaatt
gtgactcctgacaaacttgagctacctccactacgggagctgattgaattatgcgacttg
ttcgggtactataaaaaagagaagtgtaccaataagggtgaaacagttaatgcggagctt
actgtacaactgaaagatgttctgttgactggagaggggtgcgatcggactaaaaaaggt
gcaaaaggagaagcagctcgtcgtttactcaagaaacttgaggaaagaggtatttcattt
tccaagaagaggaaactggatgctaaccaagtaggtgattcctcttcccttgacatcaac
cataaggtcagcgaccaagcaactgtcaaagattcttcagcgttaatggtctataaaagg
cgaaagacaactgaaatgcctctagctgctccaccagctggagtttctccttcagtaatt
gccaggaaaacctctagccccaacaatgccgccccagtcattaaagcaatcaacatgaag
aaaggagggcctcgatctgctctttttgctctgtgcatgaaacaacagtggccaaagccg
ggctttaaaataacagaaactcagtcaagaactccattcacatttggtgaaagctcaacc
aagtacttcaacagttttgtcgcacaagtaaccttgcacatacccaactccggcgtcatt
gaatgcacaggagatgctagacctgacaaggggagttcagaagattctgcagccgtcgtc
ttgtttcaagagcttcaacgacagggaagagttgtaattgctgggtga
DBGET
integrated database retrieval system
