Malus sylvestris (European crab apple): 126632059
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Entry
126632059 CDS
T09027
Name
(RefSeq) chaperonin 60 subunit alpha 2, chloroplastic-like isoform X1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126632059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126632059
03110 Chaperones and folding catalysts [BR:
msyl03110
]
126632059
03029 Mitochondrial biogenesis [BR:
msyl03029
]
126632059
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msyl04147
]
126632059
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
126632059
Messenger RNA biogenesis [BR:
msyl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
126632059
Chaperones and folding catalysts [BR:
msyl03110
]
Heat shock proteins
HSP60 / Chaperonin
126632059
Mitochondrial biogenesis [BR:
msyl03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
126632059
Exosome [BR:
msyl04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
126632059
Exosomal proteins of other body fluids (saliva and urine)
126632059
Exosomal proteins of breast cancer cells
126632059
Exosomal proteins of colorectal cancer cells
126632059
Exosomal proteins of bladder cancer cells
126632059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
SAP
Motif
Other DBs
NCBI-GeneID:
126632059
NCBI-ProteinID:
XP_050158237
LinkDB
All DBs
Position
8:28204834..28209689
Genome browser
AA seq
588 aa
AA seq
DB search
MSISFSSNSFQLFFHKPFFSQQSNFQKQQVAGFWRKPESLRRLVVKAGAKKISFGTECRD
ALQTGIDKLADAVSLTLGPKGRNVVLSESEKLKVINDGVTIVQSIELSDTIENVGAMLIQ
EVAKKMNNLAGDGTTTAVILTREMIRGGLLAVAFGANPISLKKGMDKTVNELVKILKEKS
LPVKGRNDIKAVASISAGNDKFIGNLIAEAIEKIGPDGVISIESSSSFETSVLVEEGLKF
DKGYMSSHFITNQEKSLVEFDKAKVLVTDHKISTVREIVPLLEKTTQLSIPLLIIAEDIS
KQVLETLVVNKKQGLLKVAVVKCPGFAEGKKAILQDIALMTGADFLSGDFGLTLESATSD
QLGIARKVKITSNSTTIVADPSTKAEIQARILQIKKDLAETENAHLSRKLSERIAKLCGG
VAVIKVGAHTELELEDRKLRIEDAKNATFAAMEEGVVPGGGATYVHLSEFIPTIKNSMED
LDEQIGADLVAKALLAPAKAIATNAGDDGEVVVEKTKSSDWRVGYNAMTGNYEDLPDAGV
IDPCRVSRCALQIAASIAGVILTTQAVLVEKTKKKKPAVPFVPGITPQ
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctccttctcctcaaactcctttcaactcttctttcataaacctttcttctct
cagcagagcaattttcagaagcaacaagtagctgggttttggagaaagccagagtctttg
aggaggttggtggtcaaagcaggcgcaaaaaagatatcttttggtacagaatgcagggat
gccttacaaactgggatagataaacttgctgatgctgtttcccttaccttaggacctaaa
ggacgtaatgttgttctttctgagtctgaaaaactgaaagtgataaatgatggtgtaaca
attgttcagtccatagagctatcagatacaattgagaacgtgggagcgatgctaatccaa
gaggttgcaaagaaaatgaataatttggcaggtgatggtaccaccactgctgtcattttg
acaagagaaatgatcagaggtggacttttggcagtagcttttggagctaacccaatttct
ttgaagaaaggaatggataagactgtaaatgaactggtcaagatcttgaaggagaagagt
cttccagtaaaaggaaggaatgacattaaagctgtagcttcaatttctgctggaaatgac
aagttcatcggtaatttgattgctgaagctatagaaaagattggacctgatggagtaatc
tcaattgagtcatcctcgtcatttgaaacgtctgttttagttgaagaagggctgaagttt
gacaagggatacatgtcctcccacttcattacgaaccaggaaaaatctcttgtggagttt
gacaaagctaaggtcctagtaactgatcacaagatctcaactgttagagaaattgttcct
ttattggaaaagacaacccaactgagtatcccgctgctaatcattgcagaggatatctca
aagcaagtactggaaacactagtggtgaacaaaaagcagggtttacttaaagtcgctgtt
gttaaatgtcctggatttgcagaggggaaaaaagctattctgcaagatattgcacttatg
acaggtgctgattttctctctggagattttggtttgacccttgagagtgcaacatcagat
caacttggaattgcaagaaaagtgaaaataacaagtaattcaacaacgatagttgcagac
ccttctactaaagctgagattcaggcaagaatattacagatcaagaaggatctggcagaa
acagaaaatgcacacctgtcgagaaagctctctgaaagaattgccaaactttgcggtgga
gttgctgtaattaaggtaggagcacatactgagttagaacttgaagatcgcaaactcaga
attgaagatgcaaagaacgctacatttgctgctatggaggaaggagtggtgcctggtggt
ggtgccacatatgtacatctctcagaatttattcctaccataaagaattctatggaagat
ttagatgagcagattggtgctgaccttgtagcaaaggctctacttgctcctgcaaaagca
attgcaactaatgcaggggatgatggagaagttgttgtggagaagactaaaagttctgat
tggagagttgggtacaatgcaatgacaggaaactatgaagatctcccagatgcgggagtt
atagatccttgtagggtttcaagatgtgcccttcaaattgcagcctccattgccggagtg
attcttacaactcaagctgtattggtggagaaaacaaagaagaaaaagccagctgttcct
tttgttccgggaataactcctcagtaa
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