Malus sylvestris (European crab apple): 126632118
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Entry
126632118 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126632118
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
126632118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msyl03032
]
126632118
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126632118
DNA replication proteins [BR:
msyl03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
126632118
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
126632118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
LIG3_BRCT
RTT107_BRCT_5
TopBP1_BRCT0
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
126632118
NCBI-ProteinID:
XP_050158312
LinkDB
All DBs
Position
8:16418911..16427116
Genome browser
AA seq
980 aa
AA seq
DB search
MRKTAAFQGANVFMSRNLVPPEMFDALHDALKHNGANVFLCCDPSRTAPNDYHVIESSDH
VKFEDLRAKGCNLLGPQCVFACASEHRALPKQGFTCCLAMDGSKVLASGFQGDEKIKIEK
LVTAMGGVLQTQTSSDVNFVIVKNVLAGKYKWALNTLKKPIVTVNWLYQCWKEHRTVSQD
SFRVLPFSGLTISVTRIPADERKKIEKLIIENGGKYSAELTKKCTHLISDAPEGDKYKVA
RRWGHIQIVTQTWFDQSISKRACLHEESYPVQGGSISSNKSVRGCFTLQNSQSSASGNLQ
FVPPSVVADSNLTAAPCSGTVDSDLEATVSQKMTTIFSYAPFVVKNEDSKAPTFDPLESK
SEVNLDGCVADDSQSEGDDLYLSECRISLIGFEASELRRLVNMVRRGGGSRYMSFNDKLT
HIVVGTPSEIEKKEVRGLAALGVIHVVRTAWLEDCDHEKKEIPVLQRHIAHDLLLPEGAL
TSMTNKVKGGILMAHLSMPADQLQRNTSAATGMGMLEKNREEKPEINMKGDGSMEAAVGL
SKRSKLTVLNGKSKVQLNDKTNGLQKVQHDFNVQNGKPSSVFKGRIFCFSNSFPEDKRGQ
IIEWVIQGGGELVDGHIKQKVHFTIECHGVRPISLDATESTYVSSHWIRSCLEDGCLVDV
TSHILYAPLPCLIPLPGYENFRFCVSQYNEKDRVLLRNLCYTLGAKLVEKFTRKVTHLLC
KFTNGPKYEAALKYGIHTITSDWIYECVKQNKVVALDQFCPKEVTAEDREAGLCTTSQYP
TQAFQTIFGGNSSECPSQLQDPRNSSAEFIGNRNDSLREEAKESSFSNKKARVSKVDSSG
VHLSIPVCTTGVSKKVPGEVSSVVPDVASAIEDLLEQTSKIHDQQSPGRSLCDGNIFSPD
CSILREERSDSHSVIGLSRSNWLNSAGKKDDMHNPSGEQKAGFYDGFSETQTESQVVGYE
EDLSGRQMLIDRVRTRSSLS
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgcggaaaacggcggcgtttcagggggccaacgtcttcatgtcgcggaacctggtcccg
cccgagatgttcgacgctcttcacgacgcgcttaagcacaacggcgccaatgtcttcctc
tgctgcgacccttctcgcaccgcccccaacgactaccacgtcatcgagtcctccgatcac
gtgaagtttgaggatcttagagccaaaggttgcaatttgctaggtcctcaatgcgtgttt
gcttgtgcgagtgagcatagggctctgcctaaacaagggtttacttgttgccttgcaatg
gatggttccaaagtacttgcgtcgggttttcagggggatgaaaagattaagatagagaag
ttagtaacagcaatggggggagttttgcaaacgcaaacatcatcggatgttaactttgtc
attgtgaagaatgtattggctggaaaatacaagtgggctttaaatactttgaagaagcca
attgtcacggttaattggttatatcagtgctggaaagagcatcgcactgtgtctcaagat
tcatttagggttcttcctttttctgggctgacaatctctgtaaccagaattccagcagat
gagcgaaagaagattgaaaagcttatcatagaaaatggtggaaaatattctgctgaacta
acaaagaagtgcacgcatttaatttctgatgctccagaaggtgacaaatacaaggttgca
cgaagatggggccacattcagattgtaactcaaacatggtttgatcaatctatttctaaa
agagcttgtcttcatgaggagtcctatcctgttcaaggtggttctatatcttcaaataaa
agtgtaaggggttgctttactttgcagaatagccaaagcagtgctagtgggaacttgcaa
tttgtgccaccatcagtggttgcagattcaaacttgacagctgccccttgttctggaact
gtggattctgatttagaagctactgtctcacaaaagatgaccactatattttcttatgct
ccttttgttgtgaaaaatgaggatagtaaggcacctacctttgatcccttggagtccaaa
agtgaagtgaaccttgatggttgtgttgccgatgattctcagtctgaaggtgatgacctg
tacttgtcagaatgtagaatatctcttattggctttgaagcttccgaattgcgtagactg
gttaatatggttcgcagaggtgggggctcccgatatatgtcgttcaatgataaattgacg
cacatagtagttggaactccttcagaaatcgaaaagaaagaggtaaggggtcttgcagct
ttaggggtcattcatgttgttagaactgcctggcttgaagattgtgatcatgagaaaaaa
gagatccctgttctccaaaggcacatcgcccacgatctacttcttcctgaaggagcacta
acaagtatgactaacaaggttaaaggtggaatcttgatggctcatctaagcatgcctgct
gatcaattacaaaggaacacaagtgctgcaactggaatgggaatgttggagaagaacaga
gaagagaaaccagaaattaacatgaaaggtgacggatccatggaagcagctgttggacta
tccaaacgaagtaagctaactgtcctaaatggcaaaagtaaggttcaattaaatgataaa
acaaatggtctacagaaggtgcaacatgatttcaatgttcagaacggcaagccatcatct
gtctttaaggggagaatattttgcttttcaaattcctttcctgaagataagagaggtcaa
atcattgaatgggtaattcaagggggaggagagttagttgatggccatataaaacagaaa
gtgcacttcactattgaatgtcatggtgtgagacctatatccctggatgctactgaaagt
acatatgtatcaagtcactggatcaggtcgtgtttggaggacggatgcttggtggatgtt
actagtcacattctatatgctccacttccctgcctgattcctttgcctggatatgaaaac
ttccggttttgtgtttctcaatataatgagaaagatagagttttactaagaaatttatgt
tatacacttggagctaaattggtggaaaagtttacgaggaaggttacccatttgctgtgc
aagtttaccaatggaccaaagtatgaggctgctcttaaatatggtatacacacaattacg
tccgactggatatatgaatgtgtgaagcagaataaagtcgttgctcttgaccaattttgt
ccaaaagaagtcactgctgaagatcgggaggcagggctgtgcaccacaagtcagtatcct
acacaagcttttcaaacaatatttggaggcaattcgtctgagtgtccaagtcagttacaa
gacccgagaaactcatcagctgaatttattggcaatagaaatgacagcctcagagaagag
gccaaagaatcaagcttttccaataagaaggcaagggtttcaaaagtagactcttctggg
gtgcatttaagtattcctgtctgtaccactggagtcagcaagaaagttccgggtgaagtt
tcttcagttgttcctgatgtagcttctgctattgaggacttactggagcagacaagtaag
attcatgatcagcaatcgccagggagaagtttgtgcgatggcaatattttttcaccggat
tgttcaattcttcgtgaagagcgctcggattctcactccgtcattggattatcgagatct
aactggttaaacagtgctgggaaaaaagatgacatgcacaatccttccggagaacagaag
gctggcttttatgatggttttagcgaaacacagaccgagtctcaggttgttggttacgag
gaagatttgtcaggccggcaaatgcttatagatagagtacgaacccgaagcagcctgtct
tga
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