Malus sylvestris (European crab apple): 126632439
Help
Entry
126632439 CDS
T09027
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
126632439
Enzymes [BR:
msyl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
126632439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
126632439
NCBI-ProteinID:
XP_050158819
LinkDB
All DBs
Position
8:complement(25566111..25572016)
Genome browser
AA seq
646 aa
AA seq
DB search
MSSQRVRLIIQDRYVVMDNGILQVTLSNPDGIVTRIQYNGIDNLLEVLNEEVNRGYWDLV
WSEAGSVGTTGTFDVIKGTKFKVRVENEEQVEISFTRKWNPSQEGKLVPLNIDKRFIMLR
NSSGFYSYAIYEHLKEWPPFNLPQTRITFKLRKEKFHYMAIADNRQRYMPLPDDRSPERS
QALAYPEAVLLVDPIEPEFKGEVDDKYEYSCENQNLHVHGWVCMDPPIGFWQITPSDEFR
SGGPLKQNLTSHVGPTCLAMFLSAHYSGEDLVLKLKPDEPWKKIFGPVFIYLNSAFDATD
PSPLWDDAKKQMMTEVQSWPYKFPASEDYPPSDQRGNVKGRIQILDRYVSKDRVPGNGAY
VGLAPPGDVGSWQRDCKGYQFWTRADEKGYYSIQNIREGDYNLYAWCPGFIGDYRYDATI
SITAGCDIDVDDIVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVNHPDRFRQ
YGLWERYQELYPDEDLIYSIGTSDYTKDWFFAQVPRKKDEDTYQGTTWQIKFQLKHFSES
DTLKLRIALATANIAELQIRINDSKADPPLFTTGVIGNDNTIARHGIHGLYWLYNIDIPG
TLLVEGANTLFLTQPMSSSPSAPFHGLMYDYIRLEGPSSSSSSSTT
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctcagagggttcgactgattattcaggaccgttatgtggtcatggataatggc
atacttcaagttacgttatcaaatccagatggaattgttaccagaatacaatacaatggc
atcgacaatttgctcgaagttctaaatgaagaagtaaatagagggtattgggaccttgtt
tggagtgaagcaggaagtgtgggcacaaccgggacatttgatgtgattaaagggacaaaa
ttcaaggttagagtggaaaacgaggaacaagtagagatctccttcacaagaaagtggaat
ccgtctcaagagggaaaacttgtccctctcaatatagataaaagatttataatgcttcgt
aattcttcaggcttctactcatatgccatctatgagcacttgaaagaatggcctcctttc
aaccttccacagaccaggattaccttcaagctcagaaaagaaaagtttcactatatggcc
atagcagataacaggcaaagatacatgccccttccggacgatcgatcacctgagagaagt
caagccctagcttaccctgaagcagtccttcttgtcgatcctatagagccagaattcaag
ggagaggtagatgataagtatgaatactcatgcgagaaccaaaacctgcatgttcatggt
tgggtatgtatggacccacccattggcttttggcaaataacgcccagtgatgaatttcga
tctggtggacctctcaaacagaatctcacctcccatgttggccccacttgccttgcgatg
tttcttagcgctcattattcaggagaagacctagtgctgaagctgaaaccagatgagcca
tggaagaaaatttttggtcctgtattcatttatcttaattctgcgttcgatgcaactgat
ccatcaccactttgggatgatgcaaaaaaacagatgatgacagaagtgcaaagctggcct
tacaagtttcctgcttccgaggattatccgccgtcagatcaacggggcaatgttaagggt
agaatacagattctggataggtatgttagtaaagatcgcgtacctggaaacggtgcgtat
gtaggcttggcaccaccaggagacgttggatcatggcaaagagattgtaagggctaccag
ttctggactagggcagatgagaaaggatattactccatacagaatatacgcgagggtgac
tataatctctatgcatggtgtcctggttttatcggagattatcgatatgacgcaactatt
agcataaccgcgggttgtgatattgatgtggatgatattgtatatgagcctccaagagat
ggaccaacgttgtgggaaattggcatccctgatcgttctgctgctgaattctatgttcct
gatcctaatccaatgtatatcaataaactttatgtcaaccatcctgataggtttaggcag
tacggattatgggaaagatatcaagagttatatcctgatgaagatttaatttacagcatc
ggcaccagtgactatactaaagactggttcttcgcccaggttcctaggaagaaagatgaa
gacacatatcaaggcactacatggcaaatcaagtttcaacttaagcatttcagtgaaagt
gataccctcaaacttcgaatagccctcgccactgcaaacattgcagaattacagattcga
ataaatgattcgaaagccgaccctccgctgtttacgaccggagtgattggaaacgacaat
acaattgctaggcatggaatccatggtctgtactggctgtataacatagatataccaggc
acattgctggtggaaggagccaataccctatttctaacgcaaccaatgagcagtagccct
tcggcacctttccacggactcatgtatgactatattcgtttagaaggtccatcatcttct
tcttcttccagtaccacctaa
DBGET
integrated database retrieval system
