Malus sylvestris (European crab apple): 126632440
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Entry
126632440 CDS
T09027
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
126632440
Enzymes [BR:
msyl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
126632440
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
126632440
NCBI-ProteinID:
XP_050158821
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Position
8:complement(25514552..25520514)
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AA seq
645 aa
AA seq
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MSSQSVRLIIQDRYVVMDNGILQVTLSKPDGNVTKIQYNGIDNLLEVLDEEVNRGYWDLV
WSEAGSVGTTGTFDVIKGTKFKVRVENEEQVEISFTRKWNPSQKGEVVPLNIDKRFIMLR
NSSGFYSYAIYEHLKEWPPFNLPQTRIVFKLRKEKFHYMAIADNRQRYMPLPDDRSSERS
QALAYPEAVLLVDPIEPEFKGEVDDKYEYSCENQNLHVHGWVCMDPPVGFWQITPSDEFR
SGGPLKQNLTSHVGPYCLAMFLSAHYSGEDLVLKLKPDESWKKVFGPVFIYLNSASDVTD
PSPLWDDAKKQMMTEVESWPYKFPASKDYPPPDQRGNVKGRIQILDRYVSKDRIPGNGAY
VGLAPPGDAGSWQRDCKGYQFWTRADEKGYYSIENIREGDYNLYAWCPGFIGDYRYDATI
SITAGCDIDVDDIVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVNHPDRFRQ
YGLWERYQELYPDEDLIYSIGTSDYTKDWFFAQVPRKKDDETYQGTTWQIKFQLKHFSES
VTLKLRIALATANIAELQIRINDSKADPPLFTTGVIGKDNTIARHGIHGLYWLYNINIPG
TLLVEGANTLFLTQTMSTRPLAPFHGLMYDYIRLEGPSSSSSSTT
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctcagagcgttcgactgattattcaggaccgttatgtggtcatggataatggc
atactccaagttacgttatcaaaaccagatggaaatgttaccaaaatacaatacaatggc
atcgacaatttgctcgaagttcttgatgaagaagtaaatagagggtattgggaccttgtt
tggagtgaagcaggaagtgtgggcacaaccgggacatttgatgtgattaaagggacaaaa
ttcaaggttagagtggaaaacgaggaacaagtagagatctccttcacaagaaagtggaat
ccgtctcaaaagggagaagttgtccctctcaatatagataaaagatttataatgcttcgt
aattcttcaggcttctactcatatgccatctatgagcacttgaaagaatggcctcctttc
aaccttccacagactaggattgtcttcaagctcagaaaagaaaagtttcactatatggcc
atagcagataacaggcaaagatacatgcccctccctgacgatcgatcatctgagagaagt
caagccctagcttaccctgaagcagtccttcttgtcgatcctatagagccagaattcaag
ggagaggtggatgataagtacgaatactcatgtgagaaccaaaacctgcatgttcatggt
tgggtatgtatggacccacccgtcggcttttggcaaataacgcccagtgatgaatttcgt
tccggtggacctctcaaacagaatctcacctcccatgttggcccctattgccttgcgatg
tttcttagcgctcattattcaggagaggacctagtattgaagctgaaaccagatgagtcg
tggaagaaagtttttggccctgtattcatttatcttaattctgcgtccgatgtaactgat
ccatcaccactttgggatgatgcaaaaaaacagatgatgacagaagtggaaagctggcct
tacaagtttcctgcttccaaggattatccgccgccggatcaacggggtaatgttaagggt
agaatacaaattctggataggtatgttagtaaagatcgcatacctggaaacggtgcgtat
gtaggcttggcaccaccaggagacgctggatcatggcaaagagattgtaagggctaccag
ttttggactagggcagatgagaaaggatattactctatagagaatatacgcgagggtgac
tataatctctatgcatggtgtcctggttttatcggagattatcgatatgacgcaactatt
agcataaccgcaggttgtgatattgatgtggatgatattgtatatgagcctccaagagat
ggaccaacgttgtgggaaattggcatccctgatcgttctgctgctgaattctatgttcct
gatcctaatccaatgtatatcaataaactttatgtcaaccatcctgataggtttaggcag
tacggattatgggaaagatatcaagagttatatcctgatgaagatttaatttacagcatc
ggcaccagtgactacactaaagattggttcttcgcccaggttcctaggaagaaagatgat
gaaacatatcaaggcactacatggcaaatcaagtttcaacttaagcatttcagtgaaagt
gttaccctcaaacttcgaatagcccttgccactgcaaacattgcagaattacagattcga
ataaatgattcgaaagcagaccctccgctgtttacgactggagttattggaaaggacaat
acaattgctaggcatggaatccatggtctgtactggctgtataacataaatataccaggc
acattgctggtggaaggagccaataccctatttctaacgcaaacaatgagcaccaggcct
ttggctcctttccatggactcatgtatgactatattcgtttagaaggtccatcatcttct
tcttccagtaccacctaa
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