Malus sylvestris (European crab apple): 126632581
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Entry
126632581 CDS
T09027
Name
(RefSeq) nuclear poly(A) polymerase 4-like isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126632581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126632581
Enzymes [BR:
msyl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
126632581
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
126632581
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
126632581
NCBI-ProteinID:
XP_050158965
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All DBs
Position
8:9045570..9051632
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AA seq
683 aa
AA seq
DB search
MAGSEDPVASSPAEQPPKHYGTTRPIFLSGPTEYDLQRNVELEKYLIDSGLYESKDEAAK
REEVLGRIDQIVKGWVKQLTIERGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG
PSYVNREEDFFIILHGILAELEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVP
EDVDISYGSVLYDVDEQTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSN
VTGFLGGVNWAILVARICQLYPNAIPSVLVSKFFRVYTQWRWPNPVILCSIEENELGFPT
WDPRRNPRDRLHHMPIITPAYPCMNSSYNVSVSTLRVIAEQFDHGNRICEEIELNKAQWS
ALFEPYLFFEAYKNYLQVDIVAADVDDLLTWKGWVESRFRQLTLKIERDTKGMLQCHPYP
KEYVDVSKPCPHCAFFMGLQRKEGVRGKEGQQFDIRGTVDEFREGINMYMFWKPGMDIYV
SHVRRKQLPPFVFPDGCKRPRLSMHVSQQDERTYEDSAGCSSGSAERHTRRKIDHKTEDV
RAIKLEKQTSVSSQLMESVAPESSTGGAPDTSFSNSIRLECLATGDAEKKSDSRLPVEQL
ESERGSVGNVRMVDNVVHESNTISECTSMHVPEFPKVRNEVKPSQEDYEVKPSEQLEKPL
PWKELVIPCAASISESKETCEMT
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggcgggttctgaggatccagtggcctcttccccggctgagcagccgccaaagcactac
ggcaccaccaggccaatcttcctttccggtcctaccgagtatgatcttcaacgaaatgtc
gaactcgaaaagtacttgattgattcgggactttacgagagtaaagacgaggctgcgaag
agagaagaggttcttggtcgcattgatcagattgtgaaaggctgggtgaagcagttgaca
attgaaagaggctacacggatcagatggtggaggacgcgaatgctgtcatttttactttt
gggtcttatcgtcttggggttcatgggcctggagctgacatagacactttgtgtgttggg
ccatcatatgtgaatcgagaggaagatttctttattatattgcatggtatccttgctgaa
ttggaagaggttactgaacttcaaccagttcctgatgctcatgtccccgtcatgaaattc
aagttccagggaatatcaatagatcttttgtatgcaagcatctctcttttggttgttcca
gaagatgtagacatctcatatggatctgtgctatatgatgttgatgagcaaactgttcga
agtctgaacggctgcagggttgcagatcaaattcttaaacttgtccccaatgttgagcac
ttccggacgacactcagatgtttgaagttttgggctaaaagacgtggtgtttattcaaat
gttactggattccttggtggtgtaaattgggctatcttagttgctcggatatgccagctt
tatcccaatgcaattcctagcgtgttggtttccaaatttttcagagtgtatactcagtgg
cgttggccaaatcctgtaattttatgttcaattgaagagaatgaacttgggttccctaca
tgggaccctcgtagaaaccctcgggaccgccttcatcatatgccaataataactcctgca
tacccttgcatgaactctagttacaatgtctcagtaagtactttacgtgttatagcggag
cagtttgaccatggtaataggatatgtgaggagattgagctgaataaggcccagtggagt
gctctctttgaaccttatctcttctttgaggcatacaaaaattatctacaagtggacata
gttgcagctgatgttgatgacttgctgacgtggaagggatgggtggaatcccggtttaga
cagcttaccctgaagatagagcgagacacaaaagggatgctgcagtgccatccatatcct
aaggaatatgtcgacgtatccaagccatgcccgcactgtgctttctttatgggtttgcag
aggaaagagggagtgagaggtaaagaaggtcagcaatttgatatacgtggaacagtcgat
gagttcagggaaggaataaacatgtacatgttctggaaacctgggatggatatatatgtt
tctcatgttcgccggaagcagcttcctccctttgttttccccgatgggtgtaagcggcct
cgattatcaatgcatgtaagtcagcaggacgaaagaacttatgaagattctgcaggttgt
agttctgggtctgcggaaagacataccaggaggaaaattgatcataaaacagaggatgtg
agggcaatcaaactcgagaagcagacatctgttagttcacaattgatggagtctgtggcc
ccagaaagtagtacaggtggagcacctgataccagcttcagtaacagcattaggttagag
tgtctggcaactggagatgcagaaaagaaatctgatagtagattgcctgttgaacagtta
gagagtgaaaggggaagtgttggaaacgtgagaatggttgataatgttgtgcacgaatcc
aatactataagcgagtgcacatctatgcatgttcctgaattccccaaagtcagaaatgag
gtcaagccttcacaagaggattatgaggtaaaaccatctgaacagttggagaaacctctt
ccctggaaggagctggtaattccatgtgcagcttctatctcagagtccaaggaaacatgt
gagatgacctaa
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