Malus sylvestris (European crab apple): 126632855
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Entry
126632855 CDS
T09027
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-3-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03022
Basal transcription factors
msyl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
126632855
09124 Replication and repair
03420 Nucleotide excision repair
126632855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126632855
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126632855
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
126632855
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
126632855
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
126632855
NCBI-ProteinID:
XP_050159318
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Position
8:29864660..29872044
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AA seq
601 aa
AA seq
DB search
MSSSSSSSSRRVVKRAQYKDAARLKNPGIPGVLTMVENKFVFKPNDPTSTQTLDVKFRHI
KGHKNTKEGSKQAPLLNLSSSREVKSYIFEFQSFPDLHECRDFVANALSKASEAAKTGPK
KDGVTLPDEQLSAAEMELRMKLLQEDSELQKLHMQFVISGVLTESEFWATRKKLLDGESR
TKPKQRVGFKNSMILDTKPTSDGRMNKVTFNFTPEIKYQIFALKPAVHQAFLELVPSKMT
AKDFWTKYFRAEFLHSTKNAAAIAAEAAEDEELAIFLKEDEILAREARQKIRQVDPTLDM
EADQGDDYTHLPDHGIFRDGSKDITELQNEQYRRTLSQDLNRQGAVVLQGRTVDGDLEDP
NNVAEALMRSRQEPDESAVQERLDRITRMNEIDDLREPRDHRVAQLCIKDPRDYFDTQQA
NALKALDDSRIGTEQKKCSMTTEEAYGSLKESISKIKSIGLKNSTVAPEIALMVLNGLTQ
NISSTKYQLGKNPRESILDSLPNKTKEELLHHSMSIQELLRHFWSTYPITTAYLSTKVGK
LKDAMSQIYRQLEEIKESDFRHQVSLLVRPMHQALDAAFQHYESDLQKRAATVARMPNGN
A
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcatcgtcctcgtcgtcgaggcgagtggtgaagcgtgcacaatacaaggat
gcagcaagattaaagaaccctggcattcccggcgttttaactatggttgagaacaagttt
gtgttcaagccaaacgatcccacgtctacccaaacccttgatgtgaagtttagacatatt
aaaggtcacaaaaacactaaggagggatccaagcaagcacctttgcttaatctcagcagc
agtcgtgaggttaaaagttacatttttgagtttcaaagttttcccgatcttcatgaatgc
cgtgattttgtagccaatgccctatctaaggcttcagaagctgcaaaaactggtcctaaa
aaagatggagttacattgcctgatgaacaactcagtgcagcggaaatggagctccgtatg
aagctattgcaagaagacagtgaactgcagaaacttcatatgcagtttgtaatcagtggt
gttttgacagaatctgagttctgggcaactaggaagaagttgcttgatggagagagccgt
acaaagccaaaacaacgggttggttttaaaaattcaatgattttggacaccaaacctaca
agtgacggtcggatgaacaaggttacgtttaatttcactccagagattaaatatcagatc
tttgctctcaaaccggctgttcaccaggcatttcttgaactagtgcccagtaagatgaca
gcaaaagacttctggacaaaatatttcagagctgaattccttcacagtacaaagaatgct
gctgcaattgcggcagaagctgctgaggatgaggaactggcaatttttttaaaggaggat
gaaatattggcaagggaagctcgtcagaagattcgacaggttgatccaactttggatatg
gaagctgaccaaggggatgattatacacatcttcctgatcatgggatctttcgtgatggt
agcaaggacatcactgaactacagaatgagcaatacaggaggactttatcacaagacctt
aacaggcaaggggctgttgttcttcaaggcagaactgttgatggggatttagaagatcca
aataatgttgcagaggcacttatgcggtcaagacaggagcctgatgagagtgctgtgcag
gagagacttgataggattactcggatgaatgagatagatgaccttcgagaacctcgcgat
catcgtgttgctcaattatgtattaaggatcctcgagactactttgacacgcaacaagct
aatgcacttaaagctttggatgactcacgaataggaacggaacaaaaaaaatgcagcatg
actactgaggaagcatatggctccttgaaggagtctatatctaaaattaagagcattgga
ttgaaaaattccactgttgcaccagaaattgctcttatggttcttaatggactgactcag
aatatttctagtaccaagtatcaactcggaaagaatcctcgggagagtattctggacagt
ttgccaaacaaaacgaaagaggaactgctgcatcattcgatgtccattcaagaattactg
cggcatttttggtctacatatccaattacaacagcttatctttctacaaaggtaggcaaa
ctgaaggatgccatgtcacaaatctatcgacagctagaggagataaaggaatcagacttc
cggcaccaggtttctctccttgttcggccaatgcatcaggcacttgatgcggcttttcaa
cattacgaatctgacttacagaaaagagctgcaactgttgcaaggatgccgaatggaaat
gcatag
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