Malus sylvestris (European crab apple): 126632866
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Entry
126632866 CDS
T09027
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126632866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126632866
03041 Spliceosome [BR:
msyl03041
]
126632866
03009 Ribosome biogenesis [BR:
msyl03009
]
126632866
03016 Transfer RNA biogenesis [BR:
msyl03016
]
126632866
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126632866
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
126632866
Spliceosome [BR:
msyl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126632866
Complex C
U4/U6.U5 tri-SnRNP related factors
126632866
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
Pre-60S particles
Helicases
126632866
Transfer RNA biogenesis [BR:
msyl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
126632866
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
AAA_27
Motif
Other DBs
NCBI-GeneID:
126632866
NCBI-ProteinID:
XP_050159350
LinkDB
All DBs
Position
8:29917387..29924401
Genome browser
AA seq
999 aa
AA seq
DB search
METEAASLKRKSEGEAELEGAPQKQQKRDNGWASVDDEAVACLHDVSYPEGYVPPPSSSS
SAAAEASEPAKKFPFPLDPFQSEAINCLEKAESVMVSAHTSAGKTVVASYAIAMSLRNKQ
RVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEIT
REVAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWLAKIHRQP
CHIVYTDYRPTPLQHYIFPSGGNGLYLVVDEKGKFREDSFQKALNALAPAADSAKKKENG
KWQKGLIMGKAAEESDIFKMVKMIIQRQYDPVILFSFSKRECESLAMQMAKLDLNGDNEK
ANVETIFWSAMDMLSDDDKKLPQVSHMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIK
CLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICIL
MVDEKLEPSTAKMMLKGSADCLNSAFHLSYNMLLNQLRSEDGNPENLLRNSFYQFQADRA
IPSLEKQAKDLEKERDSIIIEEEDSVKNYYNLLQQYKSLKQELRDIVLSPKYCLPFLKPG
RLVSIQCAKSDESSPSFSIEDLITWGVILNFQRVKTASEDDASRKPEDSNYTVDVLTRCR
VSTDEVAKKTIKIIPLKEAGEPAVVSISISQINSMSGLCMVIPKDLLPLPARENTLKRVL
ETLSRFDKGKIPLLDPEEDMKIESSSYKKVSRRIEALENLFDRHEVARTPLIEQRLKVFH
MKQDLAAKIKSIKKTMRSSTALAFKDELKARKRVLRRLGYVTNDGVVELKGKVACEISSA
EELTLTELMFNGAFKDINVEEMVSLLSCFVWQEKLKEATKPREELDLLFSQLQDTARRVA
EVQLECKVEIDVDSFVSSFRPDIMEAVYAWAKGSKFYEIMSATPVFEGSLIRAIRRLEEV
LQQLIQAAKSIGETELESKFEEAVSKIKRDIVFAASLYL
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggaaacggaagcggcatccctgaagaggaagtcggagggagaggccgagttggaagga
gctccacagaaacaacagaagagggacaacggttgggcaagcgtcgacgacgaagcggta
gcctgcttgcacgacgtgtcgtatcctgagggctatgttcctcccccttcttcttcttct
tcagctgcagcagaagcttctgagcctgccaagaaattccccttccctctcgaccctttt
cagtctgaggccataaactgcctcgaaaaagccgagtccgtcatggtgtctgctcatacg
tcggctgggaaaactgtggtggcatcgtatgcgattgcaatgtctctaagaaacaagcag
agagtgatatacacttcaccaatcaaagcactgagcaaccaaaagtatagagagttcaaa
gaggagttttccgacgttggcttgatgacaggcgatgtaactatcgaccccaatgcttcc
tgcttggttatgaccacagaaatctggcgtagcatgcagtacaaagggtcagagataacg
cgtgaggtggcgtggattatctttgatgaggtgcattatatgcgtgatagggagagaggt
gtggtgtgggaagagagcattgttatggctccaaagaatgctcggtttgtgttcctctca
gcaactgtgccaaatgctaaggaatttgctgattggcttgcaaagattcaccgtcagcct
tgtcacattgtctatactgattataggccaactcctctgcagcattatattttcccttct
ggagggaatggtttgtacttggtagtagatgaaaaagggaaatttcgcgaagacagcttt
cagaaagctcttaatgctcttgctcctgctgccgatagtgctaagaagaaggaaaatggc
aagtggcagaagggtttgatcatgggcaaggctgctgaggaaagtgacatcttcaagatg
gtcaaaatgataattcagcgtcagtatgatcctgtaatactttttagctttagcaaaagg
gagtgcgaatctcttgcaatgcagatggcaaaattggatctaaatggggacaatgagaaa
gcaaatgtagaaaccatcttctggagtgctatggatatgctttctgatgatgataaaaag
ttacctcaggtttcacatatgctaccccttttgaagcgtggaattggtgtgcatcattct
ggcttgcttccaattctaaaggaagtgattgagatattatttcaggaaggtctaatcaag
tgtttatttgccacagagaccttcagcataggattgaacatgcctgcaaaaactgttgtg
tttaccaatgtccggaaatttgatggtgataagttcagatggctatccagtggagaatat
atacaaatgagtggccgtgctggtcgccgtggtattgataagcgtggaatatgtatactt
atggtagatgagaagctggaaccatctactgctaaaatgatgcttaaaggaagtgctgat
tgtttgaacagtgcttttcatttgagctacaacatgcttctgaatcaattacgcagcgaa
gatggtaatccagaaaatttgcttcgtaactcgttctatcaatttcaagctgatcgtgcc
atccccagtcttgagaagcaagcaaaggatcttgagaaagagagggattcaattataatt
gaagaagaagatagtgtaaagaattattacaatctgttacagcaatacaagagtttgaaa
caggaacttcgtgatattgtgctttctccaaagtactgcttaccatttctgaaacctggt
aggcttgtctcaatccaatgtgctaaaagtgatgaaagttccccctctttttccattgag
gacctcatcacatggggagtgatactaaattttcaacgggtgaaaactgcttcagaagat
gatgcaagtagaaaacccgaagattcaaactacacagtggatgttctgacaaggtgcagg
gtgagtacagatgaagttgctaagaaaaccatcaaaattatccctctcaaagaggcagga
gaacctgctgttgtctccatctccatatctcagataaatagtatgagtggactttgtatg
gtcattcctaaggatcttttgccactaccagctcgagaaaacacactgaagagagttctt
gaaactctgtcaagatttgataaaggaaagattcctcttcttgatccagaagaagatatg
aagattgaaagtagttcatacaaaaaggtgtctcgtaggatcgaggctttagagaacctg
tttgacaggcatgaagttgctagaactccacttattgagcaaaggcttaaggtttttcat
atgaagcaggatttggctgccaagatcaagtcaatcaagaaaacaatgcgctcttccact
gcattagcttttaaagatgaactgaaggcaagaaaacgggtccttcggaggctaggatat
gttacaaatgatggtgttgtggagttgaagggtaaagttgcttgtgaaatcagtagtgca
gaagagttgaccctgactgagctcatgttcaatggggctttcaaggacataaacgtggaa
gagatggtgtctcttctctcatgttttgtgtggcaggagaagcttaaggaagctacaaaa
ccaagggaagagcttgacctgctattttcacaattacaagatacagctcggagggttgct
gaggttcagcttgagtgcaaggtcgaaattgatgttgacagctttgtgagttcttttcgg
cctgatattatggaggctgtgtatgcttgggcaaaagggtccaaattctacgagatcatg
tcagctacacctgtttttgagggcagcttgatcagggcaattaggagattagaggaagtc
cttcagcaactgattcaagcagccaagtctattggagaaaccgagcttgagtcaaaattt
gaggaggctgtttcgaagatcaaaagggacattgtctttgcagcttccctatacttgtaa
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