Malus sylvestris (European crab apple): 126632896
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Entry
126632896 CDS
T09027
Name
(RefSeq) protein ALTERED SEED GERMINATION 2-like isoform X1
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126632896
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
126632896
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_IP5PC_F
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
126632896
NCBI-ProteinID:
XP_050159382
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Position
8:complement(23947778..23959651)
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AA seq
764 aa
AA seq
DB search
MEGVPFHDGNIHDLIERRYVDVRHDANQRLQMHSSLVRRLSQERELEGHQGCVNSIAWNS
NGSLLISGSDDTRINIWNYPSRKLLHSIETGHCANIFCTKFVPETSDELVVSGAGDAEVR
LFNLSRLNGRGTDDNAISPSAVYQCHTRRVKKLAVEVGNPNVVWSASEDGTLRQHDFREG
TSCPLAGSTNQECRNVLLDLRCGAKKSLADPPKQNFSLKSCDISSTRPHLLLVGGSDAFA
RLYDRRMLPPLTSCRKRTAPPPCVNYFCPMHLSDRGRASLHLTHVAFSPDGEEVLLSYSG
EHVYLMNVNHAGESLMQYTPGDVSKLTSFSPPLNGAELHQPASIVFRNGVPKRGNIAARF
EKCRNLIQIAERSLEGTDYFYGIEACNEVLDGNSCGIGPTLKHDCLCIRAGLLLKRKWKN
DVHMAIRDCYNARRLNSSSFSAHYYMSDALSQLAKHKEALEFAIAAQSLAPSNSKVAERL
EHVKRDLAAAESERNGKPNDGAPRSEPRGERVLSLSELLYRSEGNSDVSQDGPRSEREDS
DYDEELELDFETSISGDEEHDIEPNILQGSLNLRIHRRSDSAREVGGANGSSGSPSLSSQ
NERLTYQPEAAIDMKQRYVGHCNVGTDIKQASFLGQRGEYVASGSDDGRWFVWEKRTGRL
IKMFQGDEAVVNCIQCHPFDCVVATSGIDNTIKIWAPSASVPSIVAGGAAGPENADVSVV
MESNQHRLSHNRETILYSRSEILEHFRMHEFAEGSLHPFECAQS
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggagggtgtgccttttcacgacggcaacatccacgacttgattgagagacgatacgtc
gacgttcggcacgatgccaatcaaaggttgcagatgcactcgtcgttggtgcgaaggctt
tcgcaggaaagggaattggaggggcatcaaggttgtgttaattctattgcttggaattca
aatggctcgcttttaatatctggatcagatgacacacggataaatatctggaactaccct
agtcggaagcttttgcattctatagagactgggcattgtgcgaacatattttgtacaaaa
tttgtccctgaaacttctgatgagctcgtggtctctggagctggagatgcagaagttcga
ttatttaatttgtctcgtttaaatgggagaggaaccgatgataatgctatttctccatca
gctgtgtatcaatgccatactagaagagtaaaaaagttagctgttgaagttggaaatccc
aatgtggtatggagtgcaagtgaagatggaactttgagacagcatgacttccgagagggt
acttcttgcccacttgctggatccactaatcaagaatgtcgcaatgttttgcttgacttg
cggtgtggagcaaagaagtcactggctgatccccccaaacaaaatttttctttaaaatct
tgtgatatcagttccactagacctcatttactcctagttggcgggagtgatgcatttgca
cgtttatatgatagaaggatgctgccaccactgacatcctgtcggaaacggacagcgcca
cctccttgtgttaactatttttgtccaatgcatctctctgaccgtggacgtgctagcttg
catttgactcatgttgcatttagtccagatggagaagaggttctacttagttatagtggg
gagcacgtatatttgatgaatgtaaatcatgctggtgagagtcttatgcagtatactcct
ggagatgtttcgaaactaacgagcttcagtcctccactcaatggtgctgaactgcatcaa
ccagcatccattgtgttcagaaatggtgttcctaaaagaggcaacattgccgctaggttt
gagaagtgcaggaatctaattcaaattgctgaaagatccttggaggggacagattatttt
tatggcattgaagcgtgcaatgaggtgttggatggaaacagttgtggtattgggcctaca
ctaaagcatgattgcctttgtattcgtgcgggattgttgcttaagcgcaagtggaaaaat
gatgttcatatggctataagagattgttataatgctaggaggctcaatagctcctctttc
agtgctcattactatatgtctgatgctttatcgcagttggctaaacataaagaagctctg
gaatttgctatcgcagcccaatctttggctccatcaaattctaaagtagcagaacgattg
gagcatgtaaaaagggatcttgctgcagctgaatctgaaagaaatggtaagccaaatgat
ggagcacccaggtctgaacctcgaggtgaaagagtactatcactgagtgaactactctac
cgatcagagggtaatagtgatgtttcacaagatggtccaagatctgaaagagaagattct
gattatgatgaggaattggagttggactttgaaacgtcgatctcaggtgatgaagagcat
gacatcgagcccaatattctacaaggaagcttaaacttgagaattcatcgaagaagtgat
tctgctagagaagttggtggtgcaaacggctcatctggatccccttctttgtcgtctcaa
aatgaaagactaacatatcagcctgaagcagcgattgatatgaaacagagatatgttggc
cattgtaatgttggaactgacataaaacaggccagctttcttgggcagcgaggagaatat
gttgctagtggaagtgatgatggcagatggtttgtctgggagaagcgaactggtagactg
ataaaaatgtttcaaggagatgaagccgttgtgaactgtatacagtgccatccgtttgat
tgtgttgtggcaactagtggaattgacaacacaataaaaatttgggcgccaagtgcctca
gtcccatctattgtagctggtggagcagcaggaccagaaaatgctgacgtttcggtagtc
atggaatccaatcagcacagattaagccataatcgcgagactatcctgtacagccgttct
gaaattttggagcattttcgaatgcacgagttcgctgaaggaagcttgcacccatttgag
tgcgctcagagctga
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