Malus sylvestris (European crab apple): 126633179
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Entry
126633179 CDS
T09027
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126633179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126633179
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126633179
Spliceosome [BR:
msyl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126633179
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_19
nSTAND3
AAA_30
T2SSE
nSTAND_NTPase5
AAA_16
SRP54
ABC_tran
AAA_7
Motif
Other DBs
NCBI-GeneID:
126633179
NCBI-ProteinID:
XP_050159693
LinkDB
All DBs
Position
8:3084139..3094293
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AA seq
962 aa
AA seq
DB search
MLVRKQQTYSLLDAYDDDDDDGGRSSVPVVSELRKPDSHKKRFRKKGLSQEDEDDEGIAQ
EEEKRRVKRRTSPDEDHGSESEEERLRDQREREQLERNIRERDTTATRKLTERKLSKKEE
EEAIRRTNAFEKNDIEDLRKVSRQEYLKKREQKKLEEIRDDLEDEQYLFDGVKLTEAEYR
ELSYKKQIYEIVRKRSDEPEDANEYRMPDAYDDKNGVNQEKRFSVAVQRYRYQSAGDKMN
PFAEQEAWEDHQIGKATLKFGSKNKKQMSDDYQFVFEDQIEFIKASVMDGDKFDDDGEPS
ELLESRAKSTLEKLQEDRKTLPIYTYRESLLDAVEKHQVLVIVGETGSGKTTQIPQYLHE
AGYTKRGKIGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTFLKYMTDG
MLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATLDAEK
FSDYFDSAPIFKIPGRRYPVEIHYTKAPEADYLDAAIVTSLQIHVTQPPGDILVFLTGQE
EIETAEEIMKHRTRGLGTKIAELIICPIYANLPTELQSKIFEPTPEGARKVILATNIAET
SLTIDGIKYVIDPGFCKMNSYNPRTGMESLLITPISKASAMQRAGRSGRTGPGKCYRLYT
AYNYYNDLDDNTVPEVQRTNLANVVLSLKSLGIHDLLHFDFMDPPPSEALLKALELLFAL
SALNKVGELTKVGRRMAEFPLDPMLSKMIVASDKYKCSDEIISIAAMLSIGNSIFYRPKD
KQVHADNARLNFHMGNVGDHIALLKVYNSWKETNYSTQWCYENYVQVRSMKRARDIRDQL
EGLLERVEIELVSNMSDNETIKKAITSGFFPHSAKLQKNGSYRTVKHPQTVHIHPSSGLS
QVLPRWVIYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLKDVEDSLLKKMPRGEGRAQ
EG
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgttggtcaggaagcagcagacatattctcttttggatgcatatgatgacgatgacgat
gatggaggtagatcatctgtccctgttgtttcagagttaaggaaaccagattcccataag
aagcggtttaggaagaagggtttgagtcaagaagatgaagacgatgaggggattgcacaa
gaggaagaaaagagaagggtaaaaagacgaacttcgccagacgaagatcatggttcagag
tcagaagaagaaagattgcgtgatcaaagagagagggagcaattggagcggaatataagg
gagcgggacacaacagcaacacgaaagttaacggagagaaagttgtcaaaaaaggaagaa
gaggaggctattcggagaacaaatgcttttgagaaaaatgacattgaagatttaagaaaa
gtttcaagacaagaatatctaaagaaaagggagcaaaagaagttggaggaaatcagagat
gatttagaggatgagcaatacttatttgatggcgtgaaactcactgaagcagaatatcgc
gaattaagttacaagaaacaaatatacgaaattgtgaggaagaggtcagatgaacctgag
gatgccaatgagtacaggatgccggatgcctatgatgacaagaatggtgttaatcaggag
aagagattttctgtggctgtgcaacgctacaggtaccagagtgctggggataaaatgaac
ccatttgcagaacaggaagcttgggaggatcaccaaattggaaaggcaacgctgaaattt
ggttcaaaaaataaaaagcaaatgtcagatgactatcaatttgtatttgaggaccagatt
gagtttatcaaggcatcggtgatggatggtgataagtttgatgatgatggggaaccctcc
gagctacttgagtcgagggcgaaatcaaccttagagaagctccaggaggatagaaaaaca
ttacccatctacacataccgtgaatcattgctcgatgctgttgaaaaacatcaggtcctt
gttattgttggtgaaaccggttctggaaaaactacacagataccccaatatcttcacgag
gccggatacacaaagcgtggaaagattggatgcacacaaccacggcgagttgctgctatg
agtgttgctgcaagggtttctcaagaaatgggggtcaaacttgggcatgaggttggttat
tccattcgttttgaggattgcacatccgaaaagacttttttgaaatatatgacagatgga
atgctgttgcgagaattccttggtgaaccagatctggctagctacagtgtcgtgatggtg
gacgaggcccatgagcgaacactgtcaactgatattctatttggattagtaaaggatatt
gctcggtttagacccgatcttaaactgcttatctcaagtgcaacgcttgatgctgaaaag
ttcagtgattattttgattctgctccaatttttaaaattcctgggaggcggtatcctgtt
gaaatacattacacgaaagcaccagaagctgattacttagatgcagcaattgtaacttca
ctccaaatccatgtgacacaacctccgggagatatattggtgttcctcactggtcaagaa
gaaatcgagacagcagaagaaataatgaagcacagaacacggggtctagggacaaaaatt
gctgagctgattatttgtcccatatatgcaaacctaccaactgagctgcaatcaaaaatt
tttgaacccacacctgaaggggcaaggaaggttatccttgccacaaatattgcagaaact
tcgcttaccattgatgggatcaaatatgttattgaccctggtttttgcaagatgaactcc
tataatccaaggactggtatggagtcgttgttaatcactcccatctcaaaggcatctgca
atgcagagggcaggtcgatctggtcgaactggtcctggaaagtgctaccgcttatatact
gcctacaattattacaatgatttggacgacaacacagtaccagaagtgcagaggactaat
cttgcaaatgttgtgctttcattgaagagccttggtattcatgacttgttacattttgat
tttatggaccctccaccatctgaagcattactaaaagccctggaacttttatttgcacta
agtgcattaaataaggtgggtgagttgactaaagttggtcgaaggatggcagagtttcca
cttgaccccatgctatctaagatgatagttgcttctgataagtacaagtgttcagatgag
attatttccattgctgccatgctttccattggtaattcaatcttttaccgtccaaaggac
aagcaagttcatgcggacaatgcacgattgaattttcacatggggaatgtcggagatcac
attgcgttgctcaaggtttataattcatggaaagagaccaattattcaacccagtggtgt
tacgagaattatgtacaggtgagaagcatgaagcgtgctagagatattagagaccagctc
gagggactcttggagagggtggagattgagctggtttcaaatatgagtgataacgagact
attaagaaggccattacatctggcttcttccctcattctgcaaagcttcaaaagaatgga
tcttatagaacggtcaaacatccacagactgtccatatacatccgagctcagggctctca
caggtgcttccgagatgggttatataccatgaattggtacttacgaccaaggaatatatg
agacaggtgacagaattaaagccagagtggttagtggaaatagctccgcattattaccag
ctgaaggatgttgaagattcattattaaagaaaatgcctcgtggagaagggcgtgcgcaa
gaaggctga
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