Malus sylvestris (European crab apple): 126634555
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Entry
126634555 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126634555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126634555
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126634555
Spliceosome [BR:
msyl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
126634555
Complex B
126634555
Complex C
U2 SnRNP specific factors
126634555
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-GeneID:
126634555
NCBI-ProteinID:
XP_050161031
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All DBs
Position
9:33831357..33836242
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AA seq
781 aa
AA seq
DB search
MSKRKFGFEGFGINKQSTFDFERSQQAPQRLYVPPSSRGGNSHDNFEDTDLDNIDYDDND
GSNDPGNDNSHGDGGGGDEEVDPLDAFMEGIHEEVRSAPPPKPKEKAEKYKDDEEEDHME
SFLRAKKDVMLTLASDALHAGYDSDEEVYAAAKAVDAGLLEYDSDDNPIVLDKRKIEPIP
ALDHSSIDYEPFNKDFYEEKESISGMSEEDVFEYKKSLAIRASGFDVPRPVKTFEDSGFS
SQLMTAIKKQDYVKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL
QKEEGPIGVICAPTRELAHQIYLESKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVV
ATPGRLIDMLKMKALTMIRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM
PRKVEKLAREILSDPIRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDEGDV
LVFASKKAAVDEIESQLAQKGFKVTALHGDKDQASRMDILQKFKSGIYHVLVATDVAARG
LDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSLVAA
GQIVSTELMDLAMKDGRFRSKRDSRKGGGKKGRGRGGGGGGGRGVRGVDFGLGIGYNTES
NNSSSHTVASRPATVTPVRTGMMSQFKTKFVAASSNSPSQASGNSYSAPSRPALRGFVSG
GSIGGDVYRTQATSTITPALTPAPTPAPTSSQNSGVNANQKPSESSRDKPRERRRRSGWD
C
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaaaattcggattcgaaggctttggcataaacaagcaatcaaccttcgat
ttcgagcggtcacagcaagcccctcagcggctctacgtccctccgtcgtctcgcggcgga
aacagccacgacaacttcgaagacaccgacctcgacaacatcgattacgacgacaacgat
ggttccaatgaccccgggaatgacaacagccacggcgacggtggcggcggtgacgaggaa
gtagatcctctggatgctttcatggaggggattcacgaggaggtgaggtcagctccgccg
ccgaagccgaaagagaaagccgagaagtacaaggacgatgaggaggaggatcacatggag
agttttctgagggctaagaaggacgtgatgctcacgctggcatcggatgctttacacgcc
ggatatgactccgacgaggaggtatatgcggccgccaaggccgtcgatgccgggttgttg
gagtacgattcggatgataatcccattgttcttgacaagaggaagatcgagccaattcca
gctctcgatcatagttcaatcgactacgagccttttaataaggatttttacgaggagaaa
gagtcgatttcagggatgagtgaggaggatgtttttgagtacaagaagagcttggccatc
cgtgcgtcgggttttgatgtgccaaggccggtcaagacatttgaagactctggattttct
tcacagctgatgactgccataaaaaaacaagactatgtaaagccgacaccgatacagtgc
caagctctacccatagttctttccgggagagatatcattggtattgcgaaaactggttct
ggaaagactgctgcttttgtccttccaatgattgtccacattatggatcagccagaactt
caaaaagaagagggtcctattggagtgatatgtgcacctactcgagagctggcgcaccaa
atatacttagagtccaagaaatttgctaaatcacatgggatacgtgtctctgctgtatat
ggtggaatgtctaagcttgatcagttcaaagaacttaaggcaggatgtgaaatagttgtt
gctactcccgggagattaatagacatgcttaaaatgaaggcactgacaatgataagggca
acttacctagtacttgatgaggctgatcggatgtttgaccttgggtttgagcctcaaatt
aggtctattgttggtcagattcgaccagaccgacagacattgctcttttctgcaacaatg
cctcgtaaagttgaaaagttggctagggagattctctctgatcctataagagttacagtg
ggtgaggtgggaatggccaatgaggatatcactcaggttgttcatgtaattccctctgac
gctgagaagttgccctggcttcttgagaagttacctgggatgattgatgagggtgatgtt
ctagtgtttgcttcaaaaaaggctgcagtggatgagattgagtcacagcttgcacagaaa
ggttttaaagtcacagctctgcatggtgacaaggaccaggcatctcggatggatattctg
caaaaatttaaatctggcatttaccatgttcttgttgcaactgatgttgctgcccgtggt
cttgacatcaagtcaattaagtcagttgtgaactttgatattgcaaaagacatggacatg
cacgtccatcgaattggtagaacaggtcgtgctggtgataaggatggcactgcatacact
cttattacacagaaagaggcacgttttgctggtgagttggttaatagcttggttgctgct
ggtcagattgtttccacggagctcatggaccttgcaatgaaggatgggagattcaggtcc
aaacgtgattcaagaaaaggaggtggaaagaaaggtagagggaggggaggtggtggcggt
ggtggtcgaggtgtgcgtggggtggattttggtctgggaattggatataatacggaatcc
aataattcttcatcgcataccgttgctagtcgacctgctacagtaactcctgtgaggaca
ggaatgatgtcacagttcaagactaaattcgttgctgcttcatccaactctccaagtcaa
gcttcaggtaacagctatagtgcacccagcagaccagcattacgaggatttgtatctggt
ggttcaattggtggggatgtatatagaactcaggcaaccagtacaattactcctgctctt
actcccgctcccactcccgctcctacatcttctcagaactctggagtaaatgcaaatcag
aagccctctgaaagttctagagataaacctagagaaaggcggaggcgctctggttgggac
tgttga
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