Malus sylvestris (European crab apple): 126634560
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Entry
126634560 CDS
T09027
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
msyl04131
]
126634560
04121 Ubiquitin system [BR:
msyl04121
]
126634560
Enzymes [BR:
msyl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
126634560
Membrane trafficking [BR:
msyl04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
126634560
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
126634560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_UBOX
zf-RING_11
zf-C3HC4
zf-rbx1
zf-C3HC4_3
zf-RING_5
zf-ANAPC11
CxC4
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
126634560
NCBI-ProteinID:
XP_050161036
LinkDB
All DBs
Position
9:complement(19760049..19762295)
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AA seq
337 aa
AA seq
DB search
MLNILRSSRTRLVCTHKFLKKERMSGGRNTHWCYDCRRPFRLRGRDAVCPGCDGGFVQEL
DDMVHVSPMDFFELHNDDDRDRRFLEAFSVLHQLTDRRRNGSIRARSDLVPERNPAFAHL
LIFGGQIPFRLSGNSAFEALFNGFPGIGVTRGNMGDYFVGPGLEELFEQLSANDRRGLAP
ASRGSIDAMPTVKITNRHLCSDAHCPVCKDKFELGSEARQMPCDHLYHTDCIVPWLVQHN
SCPVCRQELPSQGSPGAGSGHSTSSRSRSSSFGSNTSARESGRENQGRRNPLSYLWPFRS
SSSSSSSSSSHNPTESSSSTMREHNNQMGYSGWPFNY
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgcttaatatattgaggagttcaaggacgagacttgtttgtacccataaatttctaaaa
aaggagaggatgtcaggtggccgaaacacccactggtgttacgattgcaggcgcccattt
cggctgagagggcgagacgcggtttgcccaggctgcgatggaggatttgttcaagaactt
gatgatatggttcatgtcagcccaatggatttctttgaactgcacaatgatgatgatcgt
gataggaggttcttggaagctttctcagtgttgcaccaattgacagacagaaggcgtaat
ggtagcattagggcaagatcagatttagttcctgagcgcaacccggcatttgctcatctc
ttgatttttggtggccaaataccttttcgactatctgggaacagtgcttttgaagctctt
ttcaatgggtttcctggaataggcgtgacacggggtaacatgggtgattattttgtaggt
cctggcttagaagaactatttgagcagctttcagctaatgaccggcgaggccttgcccca
gcctccagaggttcaattgatgcaatgcctactgttaagatcacaaacaggcatctctgt
tctgatgcgcactgccctgtttgcaaggacaaattcgagttgggatctgaagcaaggcaa
atgccttgtgaccatctataccacacagattgtattgtaccatggttagtacaacacaac
tcatgccctgtttgccgtcaagaactcccttcgcaaggttcaccaggagcaggaagcggt
catagcacaagtagtcgaagtagaagcagtagttttggtagtaacaccagtgcaagggag
agtggtagagaaaaccaaggaaggcgaaatcctctctcttatttgtggccatttcgctca
tctagttctagctccagctccagctctagccataacccaactgaaagtagttcatcaact
atgcgcgaacacaataatcagatggggtattcaggatggccgttcaactactag
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