Malassezia sympodialis: MSY001_0218
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Entry
MSY001_0218 CDS
T06541
Name
(RefSeq) uncharacterized protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
msym
Malassezia sympodialis
Pathway
msym03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msym00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MSY001_0218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msym03041
]
MSY001_0218
Enzymes [BR:
msym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MSY001_0218
Spliceosome [BR:
msym03041
]
Complex C
Other components
Step II factors
MSY001_0218
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_30
AAA_19
ABC_tran
T2SSE
nSTAND3
AAA_16
TsaE
SRP54
PhoH
PWI
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
30055103
NCBI-ProteinID:
XP_018738861
LinkDB
All DBs
Position
Unknown
AA seq
1132 aa
AA seq
DB search
MEDDPLYKLEFLSLVSKISTEIENHLGINDRVLAEFVISLHDQAGGSLPAFQAKLDEIGA
DFAAEFVENLDRLITTLHPKHKKAKQEKEARARALKAGDARERQAVMLPGLAIQDQAWAP
PDYYDEAAPRKRTTALAAAGAAPERPRAPEPERGRSRAPVAPPDETPVLNKIYDGIVSGV
KDFGAFVTLDGVVGRQDGLVHISALTQGRVGHPSDVVARGQPVKVKVVSIQGQRIGLSMR
DVDQQTGRDLGALQQARADAERSRAMTGANAAPLGRSAAGAPPAPPLPDDRRGRGIKRLT
SPERWEIKQLIASGVAKASDYPELMEEEFSTPASRLAGDDADEEVEIEVNEKEAPFLAGQ
TAASLELSPVKIVKAPDGSLNRAAQAGTALAKERRELKQQEMNEAAERQSRDTSTGWLDP
MAQASDKKFAQDLKGQARGQHAQQQPAWKKHAFNKTTTFGKITTLSMQEQRESLPIFKLR
EQLVQAVRDNQVLVVVGDTGSGKTTQLTQYLAEEGFADHGKIGCTQPRRVAAVSVAKRVA
EEVGCRVGQEVGYTIRFEDCTGPETRIKYMTDGMLQRECLVDPDVRAYSVLMLDEAHERT
IATDVLFGLLKKALKKRPDLKLIVTSATLDAEKFSTYFFGCPIFTIPGRTYPVEILYTKE
PEPDYLDASLITVMQIHLSEPPGDILVFLTGQEEIDTSCEILYERMRALGPSVPELIILP
VYSALPSEMQSRIFEPAPPGARKVVLATNIAETSITIDGIYYVVDPGFVKQNAYDPRLGM
DSLVVTPISQAQARQRCGRAGRTGPGKCYRLYTEAAFRNEMLPNPIPDIQRQNLSSTILS
LKAMGINDLLHFDFMDPPPAQTMLTALESLYALSALDDEGLLTRLGRKMADFPMDPPMAK
MLIASVDLGCSEELLSIVAMLSIPNVFYRPKDKQAQADAKRAKFFQPEGDHLTLLTVYNS
WVASRCSMPWCVDNFIQGRALRRAQDVRKQLVGIMDRYHHDILSCGSNYNRVRRAICSGY
FRNAAKRDPQEGYRTLAEGGGNVLFHRPPEYVVYHEVVMTSKEYMREVTAIEPKWLVEVA
PRFFRTADPANISKRKRQEKVQPLFNRYAKDQDEWRLSKQQRLARVVQSQTF
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacccgctgtacaagctcgagttcctgtcgctggtctccaagatctcgaca
gaaattgagaaccacttggggatcaacgaccgtgtcctcgctgaatttgtcatctcgcta
catgaccaggcaggcggctcgctccctgcgttccaggcgaagctcgacgagatcggcgcc
gacttcgcggccgagttcgtcgaaaatctggatcgactcattacgacgctgcatccaaag
cacaagaaggcgaagcaggaaaaggaggcgcgcgctcgcgcgctcaaggctggcgatgcg
cgggagcgccaggccgtcatgctccctggactagcgatccaagatcaagcgtgggctcct
cctgattattacgatgaggccgcgccgcgcaagcggacgacggctttggccgccgccggc
gcggcgcctgagcgcccgcgcgcgcccgagccggagcgtggccgatcgcgggcgcccgtg
gcgccaccggacgagacgcctgttctgaacaagatctacgatggcatcgtatcgggggta
aaggactttggtgcatttgtcactttggacggcgttgttgggcgccaggatggcctcgtt
cacatcagcgccctgacgcaagggcgtgtaggtcacccttcggatgtggtggcgcgtggc
cagccggtgaaggtgaaggttgtctcgatccaggggcagcgcattggactctcgatgcgc
gacgtcgaccaacagactgggcgtgacctcggtgctctgcagcaggcgcgcgcggacgca
gagcgctcacgcgccatgacgggagccaacgcggctcctttgggtcgctctgccgctggg
gcgccacccgcgcccccactgccggacgatcggcgcgggcgcggtatcaagcggcttacg
agccctgaacgatgggagatcaaacagctgattgctagtggtgtggccaaggcctccgac
taccctgagctcatggaggaagagttttccacgcctgcctcgcgtctcgctggcgacgac
gccgatgaagaggtggaaatcgaagtgaacgaaaaagaggcgccgttcctggcgggccag
acggccgcgtcactggagctgtcgcccgtgaagattgtcaaggcgccggacggctcgctc
aatcgtgcggcacaggccggcacggcactcgcgaaggagcggcgtgaactgaagcagcag
gaaatgaacgaggcggccgagcgccagtcgcgcgatacctccacggggtggcttgatccc
atggcgcaggcgagcgataagaagtttgcgcaggacctcaagggccaagcgcggggccaa
catgcgcagcagcagcctgcgtggaagaagcacgccttcaacaagacgaccacattcggc
aagatcaccacactgagcatgcaggagcagcgggagagcttgcccatcttcaagctgcgc
gagcagctagtccaggcggtgcgcgacaaccaggtcttggtcgtcgtcggtgatacgggc
tccggcaaaacgacgcagctgacccagtacctggctgaggaaggctttgcggaccacggc
aagattgggtgcacacagccgcgccgtgtggccgctgtgagtgtggccaagcgtgtggcc
gaggaggttggctgccgtgtgggccaagaggtcgggtacacgatccgcttcgaggactgc
actggccccgagacacgcatcaagtacatgactgacggtatgctccagcgcgagtgcctg
gtcgacccggacgtgcgtgcctactcggttcttatgctggacgaggcgcacgagcgcact
attgccacagatgtgctgtttggcctgctgaaaaaagccctcaagaagcggccggacctg
aagcttattgtgacgtcggccactctcgacgccgagaagttcagcacatacttttttggg
tgccccatattcacgattccgggtcggacgtaccccgtcgaaattttgtataccaaggag
ccggagcccgactatctcgatgccagtcttataacggtgatgcagattcacctctctgag
ccacccggcgacatcctggtcttcctcacgggccaggaagaaattgataccagctgtgag
attttgtacgagcgcatgcgtgcgctgggccccagcgtgcctgagctcattattttgccg
gtgtactcggcactgccgagcgagatgcagtcgcgcatctttgagccggcgccgccaggc
gcccgcaaagtcgtgctggccacgaacattgccgagacgagtattacaatcgacggcatt
tactatgtggtcgaccccggctttgtcaagcagaacgcatacgacccgcgcctcggtatg
gactcgctggtcgtcacgcctatctctcaggcccaggcgcggcagcgatgtggccgcgca
gggcgtacaggtcccggcaagtgctatcggctgtacacggaggctgcgttccgcaatgag
atgctgccgaatcccatccctgatattcagcgacaaaacctgtcgtcgacgatcctgtcg
ctcaaagccatgggcatcaatgacctgctgcactttgacttcatggatccgccgccggcg
cagacgatgctcacggcgctcgaatcgctgtacgcgctctccgccctggacgacgagggc
ctgcttacccgcctggggcgcaagatggccgatttcccgatggatccgccgatggccaag
atgcttattgcgagtgtggacctcgggtgcagcgaggagctgctgagcattgtggcgatg
ctcagcatccccaatgtgttctaccgccccaaagacaagcaggcgcaggccgatgccaaa
cgcgccaagttcttccagccggagggcgatcacctgacgctgctgaccgtgtacaattcg
tgggtcgcgagccgctgctcgatgccgtggtgcgtcgacaactttatccagggccgggcc
ctgcggcgcgcgcaggacgtgcgcaagcagctcgtgggtatcatggaccgctatcaccac
gatatcctatcgtgcggcagcaactacaaccgcgtccgccgcgctatctgctccggttac
ttccgcaatgcggccaagcgcgatccgcaggaaggctaccgcacgctggctgagggcggc
ggtaacgtcctcttccaccgtccacccgagtatgttgtgtaccatgaggtcgtgatgacg
tccaaggagtacatgcgtgaggtgacagcgatcgagcccaagtggctcgtcgaggttgcg
ccgcgcttcttccgcacggcagaccctgcgaacatctccaagcgcaagcgccaggaaaag
gtgcagcccctgttcaaccggtacgcgaaggaccaggacgagtggcgtctgtccaagcag
cagcgcctcgcacgtgtcgtgcagtcgcagaccttctaa
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