Malassezia sympodialis: MSY001_0685
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Entry
MSY001_0685 CDS
T06541
Name
(RefSeq) uncharacterized protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
msym
Malassezia sympodialis
Pathway
msym03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msym00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MSY001_0685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msym03041
]
MSY001_0685
03009 Ribosome biogenesis [BR:
msym03009
]
MSY001_0685
Enzymes [BR:
msym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MSY001_0685
Spliceosome [BR:
msym03041
]
Complex A
U2 snRNP components
U2 related factors
MSY001_0685
Complex B
MSY001_0685
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
MSY001_0685
Ribosome biogenesis [BR:
msym03009
]
Eukaryotic type
90S particles
Helicases
MSY001_0685
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Flavi_DEAD
ABC_tran
SRP54
T2SSE
nSTAND3
PhoH
Motif
Other DBs
NCBI-GeneID:
30055570
NCBI-ProteinID:
XP_018739301
UniProt:
M5E5J3
LinkDB
All DBs
Position
Unknown
AA seq
759 aa
AA seq
DB search
MSVSGPSASAGENPYLAHRKDQCAQVDELKGLTRRKVSGAEARRVLDGEMNPFAAGGPRP
FSKAYKDILAKRKELPVFSQMDEFYEKFNKSQIMVMIGETGSGKTTQIPQYVALSDLPQL
HKVRGADGVEAPRMIACTQPRRVAAMSVAKRVAEEMDLTLGKEVGYTIRFEDMTERGTTL
VKYMTDGMLLREAMNDPNLERYSTVILDEAHERTLATDILMGLLKDVAKRRPDLKIIVMS
ATLDALKFQKYFNNAPLLKVPGRTFPVETFYTQEPERDYVEAAIRTVLMIHQAEEPGDVL
VFLTGEDEIEDACRKIRAEGEKLLAEEPDLCGPLKVVPLYSSLPPAQQQRIFDSAPEAAR
PGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQ
RAGRAGRTRPGKCFRLYTERDWASELIEQTYPEILRSNLANTVLELKKLGIDNLVTFDYM
DPPAPETVMRALELLNYLGAFDDQGHLTPLGEIMAEFPLDPQLAKMLIVSPEFKCSNEIL
SIAAMLSVPNVFVRPSQASQRQAADAARAEFAHPDGDHLTLLNVYHAYKTNCPDMKTGSD
WCWQNYLSHRALIQADNVRQQLQRTMERFDLDLVSLPFEDKRYYTNIRQAIACGFFMQVA
HKSAGGGSRGAYTTVKDNQIVSPHPSTTLDHMPEFVVYHEFVLTSRNFIRTVTEVKPEWL
LEFAPSYYDPRTLDGELKRVFEALIKRRSEGRQSKKARR
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgtcagggccctccgcctcggcaggcgagaatccttacttggcacaccggaaa
gaccaatgtgctcaggtcgatgaacttaagggactcacgcgccggaaagtgtcgggggcc
gaagctcggcgtgtgctcgatggggagatgaatccctttgccgccggtggtccgcgcccc
ttttctaaggcatacaaagacattttggctaagcgcaaggagctgcccgtgttttcacag
atggacgagttttacgaaaagtttaacaagagtcaaatcatggtcatgatcggtgagacg
ggcagtggcaagacgactcaaatcccacagtacgtggcactttccgatctgcctcaacta
cacaaagtgcgtggggcggacggtgttgaggcgccgcgcatgattgcatgtacacagcct
aggcgtgttgctgccatgagtgtcgcaaaacgtgtggcggaggaaatggaccttacgctc
ggcaaggaggtcggttataccatccgtttcgaggatatgacggagcgcggcaccacgcta
gtcaaatatatgacggatggtatgcttttgcgtgaggcgatgaatgacccgaatctcgag
cgctatagcacggtcattctcgacgaggcccacgaacgcacgcttgccaccgacattctt
atgggtctacttaaagatgtggcaaagcgacgccctgatctcaaaattattgtcatgagt
gccacgctggatgctcttaagttccagaagtatttcaacaatgctccgctcctgaaggtg
ccaggccgcaccttccctgtggagactttctacacccaggagcctgaaagggattacgtc
gaggcggcaatccgcacggtactgatgatccaccaggctgaggagcctggtgatgtactg
gtgtttctcacgggtgaggacgaaattgaggatgcttgccgtaagattcgcgccgagggt
gagaaactgttggcggaggagccagacttgtgcggtcctttgaaggtggtacccctatac
tcgtctcttccaccggcgcagcagcagcgcatcttcgactcggcgcctgaggcggcccgt
ccgggcggcccccctggccgtaaagttgtcgtgagcacaaacattgccgagacgtcgttg
acgattgatggcattgtgtacgtggttgaccctgggtttagcaagcagaaggtgtacaat
ccacgcattcgtgttgagtcgctacttgttagccctatatctaaggcatctgcgcagcag
cgcgcgggtcgtgcgggtcgtacgcgtccgggcaagtgtttccgtctgtatacggagagg
gactgggctagcgaactgattgagcaaacgtaccctgaaattctgcggtctaatctggcc
aacacggtgctggagctcaagaagctgggaattgacaacctcgttacgtttgactacatg
gatccgccagcacctgagacagtgatgcgggcattggaactgctgaactacctcggtgcc
ttcgacgatcagggccaccttacgccgctgggtgagattatggctgagttccctctggac
ccgcaactggcaaagatgctgatcgtatcgcccgaattcaagtgctcgaacgagatcctg
agtattgcagcaatgctgtctgtgcccaacgtatttgtgcggccgagccaagcatcacag
cgtcaagcagcagatgctgcacgcgccgagtttgcgcatccagacggagaccatctaacg
ctcttaaatgtataccatgcgtataagaccaactgccctgacatgaagacgggcagcgat
tggtgctggcaaaattatctgtcacatcgggcattgatccaagccgacaatgtccggcag
cagttgcagcgcacaatggagcgttttgacttggatctggtgtctctaccttttgaggat
aagcgctactacaccaacattcggcaggccattgcgtgtggcttcttcatgcaggtggct
cacaagtcggcgggcggcggcagccgcggcgcttacacgacggttaaagacaaccaaatt
gtctcgcctcatccgtcgacgacactggaccacatgcctgaatttgtcgtgtatcatgag
tttgttctgacctcccgcaactttattcgaactgtaacagaggtcaagcctgaatggctc
ctggagtttgctccctcgtactatgatccccgcacactcgatggagagctgaagcgagtc
tttgaggcgctcatcaagcgtcgcagcgagggtcgccagagcaaaaaggcccgcaggtag
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integrated database retrieval system
